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Add Darwin Core paper to biblio. authored by Anthony Hombiat's avatar Anthony Hombiat
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standards.md
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* **[Species 2000]** * **[Species 2000]**
* **[BioSharing]** * **[BioSharing]**
### Ontologies (see the [OBO Foundry]: Open Biomedical Ontology Foundry) ### Ontologies
| Topic | Prefix | Full name | Namespace | VOWL | LOV | Doc | | Topic | Prefix | Full name | Namespace | VOWL | LOV | Doc |
| --- | --- | --- | --- | ---| --- | --- | |---|---|---|---|---|---|---|
| People | [FOAF] | Friend Of A Friend | http://xmlns.com/foaf/0.1/ | [VOWL](http://visualdataweb.de/webvowl/#iri=http://xmlns.com/foaf/0.1/) | [LOV](http://lov.okfn.org/dataset/lov/vocabs/foaf) | [doc](http://xmlns.com/foaf/spec/) | | People | foaf | Friend Of A Friend | http://xmlns.com/foaf/0.1/ | [VOWL](http://visualdataweb.de/webvowl/#iri=http://xmlns.com/foaf/0.1/) | [LOV](http://lov.okfn.org/dataset/lov/vocabs/foaf) | [Doc](http://xmlns.com/foaf/spec/) |
| People | [SIOC] | Semantically Interlinked Online Community | http://rdfs.org/sioc/ns# | [VOWL](http://visualdataweb.de/webvowl/#iri=http://rdfs.org/sioc/ns#) | [LOV](http://lov.okfn.org/dataset/lov/vocabs/sioc) | http://rdfs.org/sioc/spec/ | | People | sioc | Semantically Interlinked Online Community | http://rdfs.org/sioc/ns# | [VOWL](http://visualdataweb.de/webvowl/#iri=http://rdfs.org/sioc/ns#) | [LOV](http://lov.okfn.org/dataset/lov/vocabs/sioc) | [Doc](http://rdfs.org/sioc/spec/) |
| People | [ORG] | Organization | http://www.w3.org/ns/org# | | [LOV](http://lov.okfn.org/dataset/lov/vocabs/org) | https://www.w3.org/TR/vocab-org/ | | People | org | Organization | http://www.w3.org/ns/org# | | [LOV](http://lov.okfn.org/dataset/lov/vocabs/org) | [Doc](https://www.w3.org/TR/vocab-org/) |
| People | [VCARD] | vCard | http://www.w3.org/ns/org# | | [LOV](http://lov.okfn.org/dataset/lov/vocabs/vcard) | http://www.w3.org/TR/vcard-rdf/ | | People | vcard | vCard | http://www.w3.org/2006/vcard/ns# | | [LOV](http://lov.okfn.org/dataset/lov/vocabs/vcard) | [Doc](http://www.w3.org/TR/vcard-rdf/) |
| Taxon | [DwC] | Darwin Core | http://www.w3.org/ns/org# | | [LOV](http://lov.okfn.org/dataset/lov/vocabs/vcard) | http://www.w3.org/TR/vcard-rdf/ | | Taxon | dwc| Darwin Core | http://rs.tdwg.org/dwc/terms/ | [VOWL](http://visualdataweb.de/webvowl/#iri=https://raw.githubusercontent.com/tdwg/dwc/master/rdf/dwcterms.rdf) | | [Doc](http://rs.tdwg.org/dwc/terms/guides/rdf/) |
| Taxon | tc | Taxon Concept | http://rs.tdwg.org/ontology/voc/TaxonConcept# | [VOWL](http://visualdataweb.de/webvowl/#iri=https://raw.githubusercontent.com/tdwg/ontology/master/ontology/voc/TaxonConcept.rdf) | | [Doc](https://github.com/tdwg/rdf/blob/master/TCSBasedTaxon.md) |
| Taxon | tn| Taxon Name | http://rs.tdwg.org/ontology/voc/TaxonName# | [VOWL](http://visualdataweb.de/webvowl/#iri=https://raw.githubusercontent.com/tdwg/ontology/master/ontology/voc/TaxonName.rdf) | | [Doc](https://github.com/tdwg/rdf/blob/master/TCSBasedTaxon.md) |
See also See also
* [W3C vocabularies for describing people]) * [W3C vocabularies for describing people])
* [TDWG Ontologies]
#### Taxon * [TDWG vocabularies wiki]
* [NCBO BioPortal]
* **[DwC]**: Darwin Core * [OBO Foundry]: Open Biomedical Ontology Foundry
* **[DwC-A]**: Darwin Core Archive * [LinkedISA]: Investigation, Study and Assay framework
* **[TCS]**: Taxonomic Concept (Transfer) Schema * [Audubon]: Biodiversity related media
* **[TaxonConcept]** * [VoID]: The Vocabulary of Interlinked Datasets
* **[TaxonName]**
* **[LinkedISA]**: Investigation, Study and Assay framework
* **[Audubon]**: Biodiversity related media
* **[VoID]**: The Vocabulary of Interlinked Datasets
#### Gene #### Gene
...@@ -61,7 +59,9 @@ See also ...@@ -61,7 +59,9 @@ See also
### Frameworks ### Frameworks
* **[GUID LSID]**: Global Unique Identifier Life Science ID * **[GUID LSID]**: Global Unique Identifier Life Science ID
* **[TCS]**: Taxonomic Concept (Transfer) Schema
* **[ABCD]**: Access to Biological Collections Data schema * **[ABCD]**: Access to Biological Collections Data schema
* **[DwC-A]**: Darwin Core Archive
* **[SDD]**: Structure of Descriptive Data * **[SDD]**: Structure of Descriptive Data
* **[ISA]**: Investigation, Study and Assay framework * **[ISA]**: Investigation, Study and Assay framework
* **[SPICE]**: Species 2000 Interoperability Co-ordination Environment * **[SPICE]**: Species 2000 Interoperability Co-ordination Environment
...@@ -117,6 +117,9 @@ See also ...@@ -117,6 +117,9 @@ See also
[PATO]:https://raw.githubusercontent.com/pato-ontology/pato/master/pato.owl [PATO]:https://raw.githubusercontent.com/pato-ontology/pato/master/pato.owl
[OBI]:https://raw.githubusercontent.com/obi-ontology/obi/v2017-02-22/obi.owl [OBI]:https://raw.githubusercontent.com/obi-ontology/obi/v2017-02-22/obi.owl
[SO]:https://raw.githubusercontent.com/The-Sequence-Ontology/SO-Ontologies/master/so.owl [SO]:https://raw.githubusercontent.com/The-Sequence-Ontology/SO-Ontologies/master/so.owl
[TDWG ontologies]:https://github.com/tdwg/ontology
[TDWG vocabularies wiki]:https://terms.tdwg.org/wiki/Main_Page
[NCBO BioPortal]:http://bioportal.bioontology.org/ontologies/
[mage-ml]:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC126871/ [mage-ml]:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC126871/
[kgml]:http://www.genome.jp/kegg/xml/ [kgml]:http://www.genome.jp/kegg/xml/
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