Anthony HombiatThe PhyloAlps Project
Home | Data | Standards | TNRS | Model | Architecture | Technologies | User Profiles | Meetings | Biblio
Standards
Institutions
- TDWG: Biodiversity Information Standards Group (formerly Taxonomic Databases Working Group)
- HCLSIG: W3C Health Care and Life Sciences Interest Group
- BGCI: Botanic Gardens Conservation International
- NCEI: National Center for Environmental Information
- ISB: International Society for Biocuration
- Species 2000
- BioSharing
Ontologies
| Topic | Prefix | Full name | Namespace | VOWL | LOV | Doc |
|---|---|---|---|---|---|---|
| People | foaf | Friend Of A Friend | http://xmlns.com/foaf/0.1/ | VOWL | LOV | Doc |
| People | sioc | Semantically Interlinked Online Community | http://rdfs.org/sioc/ns# | VOWL | LOV | Doc |
| People | org | Organization | http://www.w3.org/ns/org# | LOV | Doc | |
| People | vcard | vCard | http://www.w3.org/2006/vcard/ns# | LOV | Doc | |
| Taxon | dwc | Darwin Core | http://rs.tdwg.org/dwc/terms/ | VOWL | Doc | |
| Taxon | tc | Taxon Concept | http://rs.tdwg.org/ontology/voc/TaxonConcept# | VOWL | Doc | |
| Taxon | tn | Taxon Name | http://rs.tdwg.org/ontology/voc/TaxonName# | VOWL | Doc |
See also
- W3C vocabularies for describing people)
- TDWG Ontologies
- TDWG vocabularies wiki
- NCBO BioPortal
- OBO Foundry: Open Biomedical Ontology Foundry
- LinkedISA: Investigation, Study and Assay framework
- Audubon: Biodiversity related media
- VoID: The Vocabulary of Interlinked Datasets
Gene
- OBI: Ontology for Biomedical Investigations
- GO: Gene Ontology
- SO: Sequence Ontology
- GONG: Gene Ontology Next Generation
- MGED: Micro Array Gene Expression Data
Phenotypic traits
Frameworks
- GUID LSID: Global Unique Identifier Life Science ID
- TCS: Taxonomic Concept (Transfer) Schema
- ABCD: Access to Biological Collections Data schema
- DwC-A: Darwin Core Archive
- SDD: Structure of Descriptive Data
- ISA: Investigation, Study and Assay framework
- SPICE: Species 2000 Interoperability Co-ordination Environment
- BioDBcore: generic description of the core attributes of biological databases
Markup languages
- MAGE-ML: MicroArray Gene Expression Markup Language
- KGML: KEGG Kyoto Encyclopedia of Genes and Genomes Markup Language
- EML: Ecological Markup Language
Tools
- Bio2RDF: Life Science Linked Data
- BioCatalogue: The Life Science Web Services Registry
- BioCASE: Biological Collection Access SErvice
- iPhylo: Taxonomic id reconciliation with Google Refine
- MNHN TaxRef Match: Taxonomic id reconciliation (work in progress)