Anthony HombiatThe PhyloAlps Project
Home | Data | Standards | TNRS | Model | Architecture | Technologies | User Profiles | Meetings | Biblio
Standards
Institutions
- TDWG: Biodiversity Information Standards Group (formerly Taxonomic Databases Working Group)
- HCLSIG: W3C Health Care and Life Sciences Interest Group
- BGCI: Botanic Gardens Conservation International
- NCEI: National Center for Environmental Information
- MGED: Microarray and Gene Expression Data Society
- ISB: International Society for Biocuration
- Species 2000
- BioSharing
Ontologies
| Topic | Prefix | Full name | Namespace | VOWL | LOV | Doc | Comment |
|---|---|---|---|---|---|---|---|
| People | foaf |
Friend Of A Friend | http://xmlns.com/foaf/0.1/ | VOWL | LOV | Doc | W3C recommandation |
| People | sioc |
Semantically Interlinked Online Community | http://rdfs.org/sioc/ns# | VOWL | LOV | Doc | W3C recommandation |
| People | org |
Organization | http://www.w3.org/ns/org# | LOV | Doc | W3C recommandation | |
| People | vcard |
vCard | http://www.w3.org/2006/vcard/ns# | LOV | Doc | W3C recommandation | |
| Taxon | dwc |
Darwin Core | http://rs.tdwg.org/dwc/terms/ | VOWL | Doc | TDWG glossary of terms, only literals, no relationship between the concepts | |
| Taxon | tc |
Taxon Concept | http://rs.tdwg.org/ontology/voc/TaxonConcept# | VOWL | Doc | Not a ratified TDWG standard | |
| Taxon | tn |
Taxon Name | http://rs.tdwg.org/ontology/voc/TaxonName# | VOWL | Doc | Not a ratified TDWG standard | |
| Taxon | taxrank |
Taxonomic Rank | http://purl.obolibrary.org/obo/taxrank.owl# | VOWL | Doc | NCBI Taxonomy + TDWG TaxonRank + Teleost Taxonomy | |
| Gene | obi |
Ontology for Biomedical Investigations | http://purl.obolibrary.org/obo/obi# | LOV | Doc | ||
| Gene | so |
Sequence Ontology | http://purl.obolibrary.org/obo/so# | VOWL | Doc | ||
| Gene | go |
Gene Ontology | http://purl.obolibrary.org/obo/go# | Doc | |||
| Traits | pato |
Phenotypic Traits Ontology | http://purl.obolibrary.org/obo/pato# | VOWL | Doc | ||
| Traits | po |
Plant Ontology | http://purl.obolibrary.org/obo/po# | VOWL | Doc |
See also:
- W3C vocabularies for describing people
- TDWG Darwin Core RDF guide
- TDWG ontologies
- TDWG vocabularies wiki
- NCBO BioPortal
- OBO Foundry: Open Biomedical Ontology Foundry
- LinkedISA: Investigation, Study and Assay framework
- Audubon: Biodiversity related media
- VoID: The Vocabulary of Interlinked Datasets
- GONG: Gene Ontology Next Generation
Frameworks
- GUID LSID: Global Unique Identifier Life Science ID
- TCS: Taxonomic Concept (Transfer) Schema
- ABCD: Access to Biological Collections Data schema
- DwC-A: Darwin Core Archive
- SDD: Structure of Descriptive Data
- ISA: Investigation, Study and Assay framework
- SPICE: Species 2000 Interoperability Co-ordination Environment
- BioDBcore: generic description of the core attributes of biological databases
Markup languages
- MAGE-ML: MicroArray Gene Expression Markup Language
- KGML: KEGG Kyoto Encyclopedia of Genes and Genomes Markup Language
- EML: Ecological Markup Language
Tools
- Bio2RDF: Life Science Linked Data
- BioCatalogue: The Life Science Web Services Registry
- BioCASE: Biological Collection Access SErvice
- iPhylo: Taxonomic id reconciliation with Google Refine
- MNHN TaxRef Match: Taxonomic id reconciliation (work in progress)