The PhyloAlps Project

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Architecture

PhyloAlps Virtual Machine

PhyloAlps Taxonomy Service

PhyloAlps Virtual Hosts Communication

DNA assembly graph rendering

sequenceDiagram
  participant user as PhyloAlps user
  participant data as Data VH
  participant seq as RawSeq VH
  user->>+data: GET http://data.phyloalps.org/assembly/001
  data->>+seq: GET http://seq.phyloalps.org/assemblies/001.gml
  seq->>-data: File 001.gml
  data->>data: Parse foo.gml
  data->>-user: Render DNA assembly graph

Taxonomy browsing

sequenceDiagram
  participant user as PhyloAlps user
  participant data as Data VH
  participant taxo as Taxonomy VH
  data->>data:[select node] 'Viridiplantae'
  opt select node
    user->>+data: click on a node of the taxonomy tree
    data-x+taxo: GET taxo.phyloalps.org/sparql/getChildren/taxid
    taxo->>-data: children in JSON format
    data->>-user: Render taxonomy tree
  end