Issues · ORG.Asm / ORG.Asm

New issue

Incomplete plastome

#53 · opened Mar 08, 2017 by jeakeller
- 0
updated Sep 20, 2017
An issue for “final fasta file” of unfold graph (step 3)

#52 · opened Mar 01, 2017 by Wen-Bin Yu
- 3
updated Sep 20, 2017
Add sam output to the unfoldrdna command

#51 · opened Jan 31, 2017 by Eric Coissac enhancement
- 0
updated Sep 20, 2017
Error when unfolding low quality data

#50 · opened Jan 26, 2017 by Eric Coissac bug critical
- 0
updated Sep 20, 2017
Indexing reads from long range PCR

#49 · opened Jan 08, 2017 by Josef Knecht
- 1
updated Sep 20, 2017
Error during buildgraph cleaning step

#47 · opened Nov 30, 2016 by Eric Coissac bug
- 0
updated Sep 20, 2017
Circle are not convert to fasta as circular secquences

#46 · opened Nov 06, 2016 by Eric Coissac bug
- 2
updated Sep 20, 2017
Problem installing org.asm on MacOsX

#42 · opened Aug 29, 2016 by Damien Hinsinger
- 1
updated Sep 20, 2017
Ubuntu, problem installing Orgasm.

#41 · opened May 18, 2016 by Vincent Manzanilla
- 1
updated Sep 20, 2017
problem in installing org.asm

#39 · opened Apr 29, 2016 by Zhengshan He
- 1
updated Sep 20, 2017
Problem installing ORG.Asm

#38 · opened Apr 28, 2016 by Eric Wafula
- 1
updated Sep 20, 2017
oa unfold memory leak?

#36 · opened Apr 28, 2016 by Rob Ness
- 1
updated Apr 25, 2023
Add info in log to know which assembling is logging

#34 · opened Apr 21, 2016 by Eric Coissac enhancement
- 0
updated Sep 20, 2017
Bug in unfoldrrna

#33 · opened Apr 21, 2016 by Eric Coissac bug
- 0
updated Sep 20, 2017
bug in path

#26 · opened Feb 22, 2016 by Martí Boleda
- 0
updated Sep 20, 2017
Bug in unfold in force mode

#25 · opened Feb 20, 2016 by Eric Coissac bug
- 0
updated Sep 20, 2017
Some nodes should be deleted several times during branch cleaning

#24 · opened Feb 18, 2016 by Eric Coissac bug
- 0
updated Apr 25, 2023
Add a new deledge command

#15 · opened Nov 03, 2015 by Eric Coissac enhancement
- 0
updated Sep 20, 2017
Error during orgasm installation on Ubuntu 16.04

#48 · opened Jan 04, 2017 by André Marques
- CLOSED
- 1
updated Sep 20, 2017
X in protein probe

#45 · opened Nov 05, 2016 by Pierre Taberlet
- CLOSED
- 0
updated Sep 20, 2017
No indexing of sequence with the --estimate-length option

#44 · opened Nov 03, 2016 by Eric Coissac bug critical
- CLOSED
- 1
updated Sep 20, 2017
No fasta output and problem with --estimate-length option

#43 · opened Sep 15, 2016 by Ghost User
- CLOSED
- 2
updated Sep 20, 2017
indexing reads problems

#40 · opened May 17, 2016 by Xiao Zhong
- CLOSED
- 1
updated Sep 20, 2017
oa index issue

#37 · opened Apr 28, 2016 by Rob Ness
- CLOSED
- 2
updated Sep 20, 2017
oa clone crash when the destination directory already existe

#35 · opened Apr 22, 2016 by Eric Coissac bug discussion
- CLOSED
- 0
updated Sep 20, 2017
Move the seed file in the oas directory

#32 · opened Apr 08, 2016 by Eric Coissac bug
- CLOSED
- 1
updated Sep 20, 2017
Store seed matches in a new way

#31 · opened Mar 17, 2016 by Eric Coissac enhancement
- CLOSED
- 1
updated Sep 20, 2017
A new way for managing seeds with the --seeds option in buildgraph

#30 · opened Mar 17, 2016 by Eric Coissac A new buildgraph command enhancement
- CLOSED
- 1
updated Sep 20, 2017
Add a command 'clone' to copy an already built assembly graph

#29 · opened Mar 17, 2016 by Frédéric Boyer enhancement
- CLOSED
- 2
updated Sep 20, 2017
Group files for index or assembly under a directory

#28 · opened Mar 17, 2016 by Frédéric Boyer enhancement
- CLOSED
- 2
updated Sep 20, 2017
Merge the buildgraph and fillgaps commands

#27 · opened Mar 17, 2016 by Eric Coissac A new buildgraph command enhancement
- CLOSED
- 2
updated Sep 20, 2017
bug in path

#23 · opened Feb 10, 2016 by Martí Boleda
- CLOSED
- 0
updated Sep 20, 2017
bug in unfold

#22 · opened Feb 04, 2016 by Martí Boleda
- CLOSED
- 1
updated Sep 20, 2017
bug in cutlow

#21 · opened Feb 04, 2016 by Martí Boleda
- CLOSED
- 1
updated Sep 20, 2017
bug in force

#20 · opened Feb 04, 2016 by Martí Boleda
- CLOSED
- 2
updated Sep 20, 2017
Bug in oa unfold second edition

#19 · opened Feb 02, 2016 by Eric Coissac bug
- CLOSED
- 0
updated Sep 20, 2017
Bug during unfolding of the assembling graph

#18 · opened Feb 01, 2016 by Eric Coissac bug
- CLOSED
- 1
updated Sep 20, 2017
Installation bug with Ubuntu LTS 14.04 and Python 3.4.3

#17 · opened Jan 08, 2016 by Eric Coissac bug
- CLOSED
- 13
updated Sep 20, 2017
Issue running "buildgraph"

#54 · opened Jun 25, 2018 by Joshua Arias
- 0
updated Jun 25, 2018
Multiple issues with installation options

#56 · opened Oct 24, 2018 by Michael G
- 0
updated Oct 24, 2018
Issue with executable orgasmi - Tutorial fails

#57 · opened Oct 24, 2018 by Michael G
- 2
updated Apr 17, 2019
bug on unfold

#16 · opened Nov 30, 2015 by Martí Boleda bug
- CLOSED
- 1
updated Nov 09, 2018
Produced gml files

#14 · opened Sep 10, 2015 by Eric Coissac enhancement
- CLOSED
- 1
updated Nov 09, 2018
Adds a new copy command

#13 · opened Sep 10, 2015 by Eric Coissac enhancement
- CLOSED
- 1
updated Nov 09, 2018
Save intermediate graph in the buildgraph command

#12 · opened Sep 10, 2015 by Eric Coissac enhancement
- CLOSED
- 0
updated Nov 09, 2018
Error in the --help of the fillgaps command

#11 · opened Sep 10, 2015 by Eric Coissac bug documentation
- CLOSED
- 0
updated Nov 09, 2018
coverageEstimate can return coverage None which breaks things

#10 · opened Aug 25, 2015 by Peter Cock
- CLOSED
- 2
updated Nov 09, 2018
Typo in index usage

#9 · opened Aug 25, 2015 by Peter Cock
- CLOSED
- 3
updated Apr 25, 2023
Typo: De Bruinj Graph

#8 · opened Aug 24, 2015 by Peter Cock bug documentation
- CLOSED
- 0
updated Nov 09, 2018
Cannot interupt buildgraph matching with Ctrl+c

#7 · opened Aug 24, 2015 by Peter Cock enhancement
- CLOSED
- 1
updated Nov 09, 2018
os buildgraph - clarify if seeds must be proteins

#6 · opened Aug 24, 2015 by Peter Cock documentation
- CLOSED
- 0
updated Nov 09, 2018
oa command with no arguments gives strange error

#5 · opened Aug 24, 2015 by Peter Cock enhancement
- CLOSED
- 0
updated Apr 22, 2023
oa command does not report the version

#4 · opened Aug 24, 2015 by Peter Cock bug
- CLOSED
- 0
updated Nov 09, 2018
BrokenPipeError during oa index

#3 · opened Aug 24, 2015 by Peter Cock
- CLOSED
- 9
updated Apr 22, 2023
oa index fails with bytes vs string problem

#2 · opened Aug 21, 2015 by Peter Cock bug
- CLOSED
- 11
updated Apr 25, 2023
Pip module and python3

#1 · opened Aug 16, 2015 by Eric Coissac
- CLOSED
- 3
updated Apr 25, 2023
Bad documentation for --no-seeds in buildgraph

#58 · opened Dec 19, 2018 by Frédéric Boyer
- 0
updated Dec 19, 2018
Installation routine on Ubuntu 18.04.2

#59 · opened May 06, 2019 by Niklas Terhoeven
- 0
updated May 06, 2019
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#72 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#73 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#74 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#75 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#76 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#77 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#78 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#79 · opened Apr 22, 2023 by Ivan Serial
- 0
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- 0
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- 0
updated Apr 22, 2023
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#82 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#83 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#84 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#85 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#86 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#87 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#88 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#89 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#90 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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- 0
updated Apr 22, 2023
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#92 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#93 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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#94 · opened Apr 22, 2023 by Ivan Serial
- 0
updated Apr 22, 2023
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- 0
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- 0
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- 0
updated Apr 22, 2023
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- 0
updated Apr 22, 2023
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- 0
updated Apr 22, 2023
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- 0
updated Apr 22, 2023
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- 0
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- 0
updated Apr 22, 2023
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- 0
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- 0
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- 0
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#113 · opened Apr 22, 2023 by Ivan Serial
- 0
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