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  • #8

Closed
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Opened Aug 24, 2015 by Peter Cock@p-j-a-cock

Typo: De Bruinj Graph

$ oa buildgraph --seeds protChloroArabidopsis example_index example_protChloroArabidopsis > example_protChloroArabidopsis_stdout.log
2015-08-24 16:36:20,570 [INFO ]  Building De Bruinj Graph
2015-08-24 16:36:20,570 [INFO ]  Minimum overlap between read: 50
...

Should be De Bruijn Graph, correction needed in python/orgasm/command/buildgraph.py

From searching the source code you also need to fix:

  • doc/sphinx/source/mitochondrion.rst
  • doc/sphinx/source/commands/buildgraph.rst
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Reference: org-asm/org-asm#8