Commits · master · ORG.Asm / ORG.Asm

03 Apr, 2019 3 commits
- Tag version 1.0.3 · 830313ac
  Eric Coissac authored Apr 03, 2019
  
  830313ac
- Change the estimation of the 1x coverage · 9cd4c328
  Eric Coissac authored Apr 03, 2019
  
  9cd4c328
- complete the .gitignore · 1d2c3667
  Eric Coissac authored Apr 03, 2019
  
  1d2c3667
11 Dec, 2018 3 commits
- Switch to vertsion 1.0.1 · e8d013ea
  Eric Coissac authored Dec 11, 2018
  
  e8d013ea
- Patch the install scripts to run with latest version of PIP · ca57f4d0
  Eric Coissac authored Dec 11, 2018
  
  ca57f4d0
- patch the obidistutils extention to rely on setuptools. · f6c75e8a
  Eric Coissac authored Dec 11, 2018
  
  f6c75e8a
03 Dec, 2018 1 commit
- Switch to version 1.0.00 · fd976f7d
  Eric Coissac authored Dec 03, 2018
  
  fd976f7d
02 Dec, 2018 7 commits
- Add gitignore files · feae63d0
  Eric Coissac authored Dec 02, 2018
  
  feae63d0
- Add ignore to the differente version of the orgasm binaries · e8ed6ad4
  Eric Coissac authored Dec 02, 2018
  
  e8ed6ad4
- Some updates into the documentation · 5a6549d2
  Eric Coissac authored Dec 02, 2018
  
  5a6549d2
- Remove version specification to the package requirement to gest the · 428af603
  Eric Coissac authored Dec 02, 2018
```
latest version
```
  428af603
- Add an extra space between #include and <stdio.h> · 2a5430d8
  Eric Coissac authored Dec 02, 2018
  
  2a5430d8
- Remove a dependency to be compatible with the new sphinx version · 1296c51c
  Eric Coissac authored Dec 02, 2018
  
  1296c51c
- Change the way to call PIP. We are now using system calls rather than · 2c1d3639
  Eric Coissac authored Dec 02, 2018
```
the pre-PIP10 internal API to conform with PIP developer
recommendations.
```
  2c1d3639
04 Feb, 2018 1 commit
- Patch a bug concerning the length selection during indexing. · bafdf166
  Eric Coissac authored Feb 04, 2018
```
Switch to version 1.0.alpha11
```
  bafdf166
31 Jan, 2017 2 commits
- Patch a bug occurring when both coverage and minread are set from the · 9848864d
  Eric Coissac authored Jan 31, 2017
```
command line options
```
  9848864d
- Patch a bug relative to tags that can be added to the fasta header · bb69c466
  Eric Coissac authored Jan 31, 2017
  
  bb69c466
27 Jan, 2017 5 commits
- Patch some bugs and switch to version alpha9 · b6f5096c
  Eric Coissac authored Jan 27, 2017
  
  b6f5096c
- Adds to illumina adapter · b1e6c937
  Eric Coissac authored Jan 27, 2017
  
  b1e6c937
- Switch to version 1.0.00-alpha7 · d2c0a0ae
  Eric Coissac authored Jan 27, 2017
  
  d2c0a0ae
- Adds the `restore` command to rescue an assembly by restoring the · eafb9e38
  Eric Coissac authored Jan 27, 2017
```
intermediate assembly as the main one.
```
  eafb9e38
- Adds possibility to remove edges based on the count of matches with · 17e6a496
  Eric Coissac authored Jan 27, 2017
```
seeds
```
  17e6a496
26 Jan, 2017 4 commits
- attempt to solve the memory bug · 76a2b9c9
  Eric Coissac authored Jan 26, 2017
  
  76a2b9c9
- Refactoring & debugging · a13e9bdd
  Eric Coissac authored Jan 26, 2017
  
  a13e9bdd
- Adds options to control minread estimate · b330de3e
  Eric Coissac authored Jan 26, 2017
  
  b330de3e
- Switch to version 1.0.00-alpha5 · 359c026f
  Eric Coissac authored Jan 26, 2017
  
  359c026f
24 Jan, 2017 1 commit

Refactoring of the unfold command · 2202ed0f

Eric Coissac authored Jan 24, 2017

- Create a new submodule for output format
- Remove the *path* and *fasta* commands integrated into unfold

2202ed0f

20 Jan, 2017 1 commit

Patches two bugs related to circular contigs · d086f56c

Eric Coissac authored Jan 20, 2017

- Patch a bug leading to delete a base at the end of circular contigs
- Patch a bug leading to give different ids to reverse-complement
circular contigs

d086f56c

04 Jan, 2017 2 commits
- Switch to version 1.0.00-alpha4 · 1d92aa97
  Eric Coissac authored Jan 04, 2017
  
  1d92aa97
- Some cleaning and forgotten commits · 02a54795
  Eric Coissac authored Jan 04, 2017
  
  02a54795
15 Dec, 2016 2 commits
- Switch to version 1.0.00-alpha3 · 381bd23b
  Eric Coissac authored Dec 15, 2016
  
  381bd23b
- Patch bug in circular unfolding · 079e4381
  Eric Coissac authored Dec 15, 2016
  
  079e4381
25 Nov, 2016 7 commits
- Switch to version 1.0.alpha2 · ffd6006e
  Eric Coissac authored Nov 25, 2016
  
  ffd6006e
- remove debug code · f15236f0
  Eric Coissac authored Nov 25, 2016
  
  f15236f0
- Fix a bug in oneXcoverage · e48ad513
  Eric Coissac authored Nov 25, 2016
  
  e48ad513
- Beginning of the sam output function · 188bb558
  Eric Coissac authored Nov 25, 2016
  
  188bb558
- Switch to the version 1.0.alpha · f967e002
  Eric Coissac authored Nov 25, 2016
  
  f967e002
- Adds an isFake function · a89b89a0
  Eric Coissac authored Nov 25, 2016
  
  a89b89a0
- Comment the sam output option · 5dd9fa97
  Eric Coissac authored Nov 25, 2016
  
  5dd9fa97
11 Nov, 2016 1 commit
- Preparation for the path2sam function · c92d2785
  Eric Coissac authored Nov 11, 2016
  
  c92d2785