Error during buildgraph cleaning step
With plant dataset SRR4996200
Traceback (most recent call last):
File "/Users/coissac/git/org-asm/ORG.asm-1.0.00-alpha2/bin/oa", line 64, in <module>
config[root_config_name]['module'].run(config)
File "/Users/coissac/git/org-asm/ORG.asm-1.0.00-alpha2/lib/python3.5/site-packages/orgasm/commands/buildgraph.py", line 563, in run
nodeLimit=assmax)
File "/Users/coissac/git/org-asm/ORG.asm-1.0.00-alpha2/lib/python3.5/site-packages/orgasm/tango.py", line 608, in fillGaps
exi = [getPairedRead(self,assgraph,i,back,end=False) for i in eiid]
File "/Users/coissac/git/org-asm/ORG.asm-1.0.00-alpha2/lib/python3.5/site-packages/orgasm/tango.py", line 608, in <listcomp>
exi = [getPairedRead(self,assgraph,i,back,end=False) for i in eiid]
File "/Users/coissac/git/org-asm/ORG.asm-1.0.00-alpha2/lib/python3.5/site-packages/orgasm/tango.py", line 848, in getPairedRead
path=assgraph.getEdgeAttr(*stem)['path'][-back:]
UnboundLocalError: local variable 'stem' referenced before assignment