oa command does not report the version
The current usage text does not report the tool version:
$ oa -h
usage: oa [-h] [--no-log] [--no-progress]
{list,index,buildgraph,seeds,compact,fasta,path,cutlow,graphstats,unfoldrdna,unfold,fillgaps}
...
optional arguments:
-h, --help show this help message and exit
--no-log Do not create a logfile for the assembling
--no-progress Do not print the progress bar during assembling
subcommands:
valid subcommands
{list,index,buildgraph,seeds,compact,fasta,path,cutlow,graphstats,unfoldrdna,unfold,fillgaps}
additional help
list List information about a read index
index Index a set of reads
buildgraph Build the initial assembling graph
seeds Build the set of seed reads
compact Recompact the assembling graph
fasta Build a fasta file from the assembling graph
path Build a fasta file from a path across the assembling
graph
cutlow Cut low coverage edge in an assembling graph
graphstats Print some statistics about the assembling graph
unfoldrdna Assembling graph unfolder for the nuclear rDNA complex
unfold Universal assembling graph unfolder
fillgaps Fill gaps of a partially assembled graph
Furthermore I would have expected oa -v
and/or oa --version
to report the version only, and immediately exit. e.g.
$ os -v
ORG.asm version 0.1.0b3