GitLab

Minimum stem coverage = 19
2016-02-02 01:00:33,796 [INFO ]  Both segments -10 and -9 are connected (paired-end=132 frg length=358.909091 sd=135.568917)
2016-02-02 01:00:33,798 [INFO ]  Both segments -9 and -12 are connected (paired-end=80 frg length=307.975000 sd=108.367543)
2016-02-02 01:00:33,800 [INFO ]  Both segments -12 and -24 are connected (paired-end=38 frg length=258.684211 sd=47.346486)
2016-02-02 01:00:33,801 [INFO ]  Both segments -24 and 16 are connected (paired-end=48 frg length=230.604167 sd=46.373367)
2016-02-02 01:00:33,803 [INFO ]  Both segments 16 and 23 are connected (paired-end=72 frg length=301.500000 sd=109.416635)
2016-02-02 01:00:33,805 [INFO ]  Both segments 23 and 19 are connected (paired-end=93 frg length=294.537634 sd=95.103516)
2016-02-02 01:00:33,807 [INFO ]  Both segments 19 and 22 are connected (paired-end=43 frg length=214.651163 sd=33.242508)
2016-02-02 01:00:33,808 [INFO ]  Both segments 22 and -5 are connected (paired-end=43 frg length=211.348837 sd=36.799825)
2016-02-02 01:00:33,808 [INFO ]  Both segments -5 and -21 are connected (paired-end=2 frg length=200.000000 sd=0.000000)
Traceback (most recent call last):
  File "/work/jchave/orgasm/ORG.asm-0.1.9/export/bin/oa", line 232, in <module>
    config['orgasm']['module'].run(config)
  File "/work/jchave/orgasm/ORG.asm-0.1.9/lib/python3.4/site-packages/orgasm/command/unfold.py", line 115, in run
    logger=logger)
  File "/work/jchave/orgasm/ORG.asm-0.1.9/lib/python3.4/site-packages/orgasm/tango.py", line 1370, in path2fasta
    logger.info("Both segments %d and %d are connected (paired-end=%d frg length=%f sd=%f)" % (oldid,stemid,connected,ml,sl))
TypeError: a float is required
(ORG.asm-0.1.9)