Skip to content

GitLab

  • Projects
  • Groups
  • Snippets
  • Help
    • Loading...
  • Help
    • Help
    • Support
    • Community forum
    • Submit feedback
    • Contribute to GitLab
  • Sign in
O
ORG.Asm
  • Project overview
    • Project overview
    • Details
    • Activity
    • Releases
  • Repository
    • Repository
    • Files
    • Commits
    • Branches
    • Tags
    • Contributors
    • Graph
    • Compare
  • Issues 19,166
    • Issues 19,166
    • List
    • Boards
    • Labels
    • Service Desk
    • Milestones
  • Merge Requests 0
    • Merge Requests 0
  • Operations
    • Operations
    • Incidents
  • Analytics
    • Analytics
    • Repository
    • Value Stream
  • Wiki
    • Wiki
  • Members
    • Members
  • Collapse sidebar
  • Activity
  • Graph
  • Create a new issue
  • Commits
  • Issue Boards
  • ORG.Asm
  • ORG.Asm
  • Issues
  • #33

Closed
Open
Opened Apr 21, 2016 by Eric Coissac@coissacOwner

Bug in unfoldrrna

While unfolding the species Abutilon_theophrasti_Medik/RSZAXPI000683-37 The graph is just constituted by a single circular edge

Traceback (most recent call last):
  File "/nfs_scratch/LECA_ENVIRONEMENT/softs/ORG.asm-0.2.03/export/bin/oa", line 62, in <module>
    config[root_config_name]['module'].run(config)
  File "/nfs_scratch/LECA_ENVIRONEMENT/softs/ORG.asm-0.2.03/lib/python3.5/site-packages/orgasm/commands/unfoldrdna.py", line 113, in run
    path = unfoldmarker(cg,seeds=seeds)
  File "/nfs_scratch/LECA_ENVIRONEMENT/softs/ORG.asm-0.2.03/lib/python3.5/site-packages/orgasm/tango.py", line 1582, in unfoldmarker
    p = set(assgraph.parentIterator(maxp[0]))
IndexError: list index out of range
Assignee
Assign to
None
Milestone
None
Assign milestone
Time tracking
None
Due date
None
Reference: org-asm/org-asm#33