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Closed
Open
Opened May 17, 2016 by Xiao Zhong@21672841

indexing reads problems

./oa index test papi_R1.fastq.gz papi_R2.fastq.gz 2016-05-17 10:36:10,321 [INFO ] Forward file compressed by gzip 2016-05-17 10:36:10,340 [INFO ] Reverse file compressed by gzip 2016-05-17 10:36:10,355 [INFO ] orgasmi -o test.odx/index /scratchfs/xzhong/tmpdir/tmpinozjhdf/unziped-dvu88jkj /scratchfs/xzhong/tmpdir/tmpinozjhdf/unziped-h5n8japu 2016-05-17 10:36:10,355 [INFO ] Starting indexing... 2016-05-17 10:36:10,355 [INFO ] orgasmi -o test.odx/index /scratchfs/xzhong/tmpdir/tmpinozjhdf/unziped-dvu88jkj /scratchfs/xzhong/tmpdir/tmpinozjhdf/unziped-h5n8japu sh: orgasmi: command not found [src/load.c:40] ERROR : Cannot open file test.odx/index.ogx

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Reference: org-asm/org-asm#40