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Last edited by Anthony Hombiat Nov 28, 2018
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techno

The PhyloAlps Project

Home | Data | Standards | TNRS | Model | Architecture | Technologies | User Profiles | Meetings | Biblio

Technologies

Operating System

  • NixOS

Data Management System

  • Small distributed relational databases: PostgreSQL + PostGIS
  • Mapping of relational data to RDF:
    • 2 W3C recommandations from the RDB2RDF Working Group:
      1. Direct Mapping: RDB to RDF Mapping
      2. R2RML: RDB to RDF Mapping Language
    • [RDB2RDF implementations]:
Name Language Mapping language Licence Comment
D2RQ Java D2RQ mapping language Free
OpenLink Virtuoso RDF Views C Virtuoso Meta Schema Language Free Mapping to external database only available in commercial version
R2RML Parser Java R2RML Free
Ontop Java R2RML Free Exist as a Protégé plugin
rdb2rdf Python Direct mapping Free
Triplify PHP Direct mapping Commercial
R2D2 PHP D2RQ mapping language Free
RDF4J aka Sesame + r2rml-api-rdf4j-bridge Java Free
  • RDF triplestore and SPARQL endpoint:
    • OpenLink Virtuoso triplestore (C)

See also:

  • What are the pros and cons of RDB2RDF tools? on Stack Overflow
  • converter2rdf on the W3C wiki
  • Graph DataBase on Wikipedia

Web Server

  • Apache HTTP Server
  • NGINX

Back end

  • Python framework (Django)
  • Server-side JavaScript framework (NodeJS + MongoDB)
  • PHP framework (Symfony or CakePHP)
  • Java framework (Java Server Faces)

Front end

  • HTML5
  • CSS3 framework (Bulma) + CSS preprocessor (SASS/LESS)
  • JavaScript + jQuery
  • Slippy Map (OpenLayers3)
  • Dynamic tables (Datatables)
  • Datepicker (jQuery UI)
  • Iconset (FontAwesome)

Dataviz

  • D3 for sets, graphs and tree structures
  • ElasticSearch + Kibana
  • Jupyter

Continuous Integration

  • Build automation tools
    • Apache Maven
    • Apache Ant
    • Gradle
    • Bower
  • CI Server
    • Jenkins
    • Travis
    • Buildbot
    • Strider
    • Gitlab CI
    • TeamCity
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