The PhyloAlps Project

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Standards

Institutions

• OBO Foundry: Open Biomedical Ontology Foundry
• HCLSIG: W3C Health Care and Life Sciences Interest Group
• TDWG: Biodiversity Information Standards group
• BGCI: Botanic Gardens Conservation International
• NCEI: National Center for Environmental Information
• ISB: International Society for Biocuration
• Species 2000
• BioSharing

Standards & frameworks

• LSID: Life Science ID
• SPICE: Species 2000 Interoperability Co-ordination Environment
• SDD: Structure of Descriptive Data
• ABCD: Access to Biological Collections Data schema
• DwC: Darwin Core
• ISA: Investigation, Study and Assay framework
• BioDBcore: generic description of the core attributes of biological databases
• TCS: Taxonomic Concept (Transfer) Schema

Ontologies

• GO: Gene Ontology
• PO: Plant Ontology
• GONG: Gene Ontology Next Generation
• MGED: Micro Array Gene Expression Data

Gene-oriented Markup languages

• MAGE-ML: MicroArray Gene Expression Markup Language
• KGML: KEGG Kyoto Encyclopedia of Genes and Genomes Markup Language

Tools

• BioCatalogue: The Life Science Web Services Registry
• TSE: Taxonomic Search Engine
• BioCASE: Biological Collection Access SErvice
• iPhylo: Taxonomic id reconciliation with Google Refine
• MNHN TaxRef Match: Taxonomic id reconciliation (work in progress)