standards.md

@@ -26,13 +26,17 @@
 
 | Topic | Prefix | Full name | Namespace | VOWL | LOV | Doc |    
 |---|---|---|---|---|---|---|
-| People | foaf | Friend Of A Friend | http://xmlns.com/foaf/0.1/ | [VOWL](http://visualdataweb.de/webvowl/#iri=http://xmlns.com/foaf/0.1/) | [LOV](http://lov.okfn.org/dataset/lov/vocabs/foaf) | [Doc](http://xmlns.com/foaf/spec/) |
-| People | sioc | Semantically Interlinked Online Community | http://rdfs.org/sioc/ns# | [VOWL](http://visualdataweb.de/webvowl/#iri=http://rdfs.org/sioc/ns#) | [LOV](http://lov.okfn.org/dataset/lov/vocabs/sioc) | [Doc](http://rdfs.org/sioc/spec/) |
-| People | org | Organization | http://www.w3.org/ns/org# |  | [LOV](http://lov.okfn.org/dataset/lov/vocabs/org) | [Doc](https://www.w3.org/TR/vocab-org/) |
-| People | vcard | vCard | http://www.w3.org/2006/vcard/ns# |  | [LOV](http://lov.okfn.org/dataset/lov/vocabs/vcard) | [Doc](http://www.w3.org/TR/vcard-rdf/) |
-| Taxon | dwc| Darwin Core | http://rs.tdwg.org/dwc/terms/ | [VOWL](http://visualdataweb.de/webvowl/#iri=https://raw.githubusercontent.com/tdwg/dwc/master/rdf/dwcterms.rdf) |  | [Doc](http://rs.tdwg.org/dwc/terms/guides/rdf/) |
-| Taxon | tc | Taxon Concept | http://rs.tdwg.org/ontology/voc/TaxonConcept# | [VOWL](http://visualdataweb.de/webvowl/#iri=https://raw.githubusercontent.com/tdwg/ontology/master/ontology/voc/TaxonConcept.rdf) |  | [Doc](https://github.com/tdwg/rdf/blob/master/TCSBasedTaxon.md) |
-| Taxon | tn| Taxon Name | http://rs.tdwg.org/ontology/voc/TaxonName# | [VOWL](http://visualdataweb.de/webvowl/#iri=https://raw.githubusercontent.com/tdwg/ontology/master/ontology/voc/TaxonName.rdf) |  | [Doc](https://github.com/tdwg/rdf/blob/master/TCSBasedTaxon.md) |
+| People | `foaf` | Friend Of A Friend | http://xmlns.com/foaf/0.1/ | [VOWL](http://visualdataweb.de/webvowl/#iri=http://xmlns.com/foaf/0.1/) | [LOV](http://lov.okfn.org/dataset/lov/vocabs/foaf) | [Doc](http://xmlns.com/foaf/spec/) |
+| People | `sioc` | Semantically Interlinked Online Community | http://rdfs.org/sioc/ns# | [VOWL](http://visualdataweb.de/webvowl/#iri=http://rdfs.org/sioc/ns#) | [LOV](http://lov.okfn.org/dataset/lov/vocabs/sioc) | [Doc](http://rdfs.org/sioc/spec/) |
+| People | `org` | Organization | http://www.w3.org/ns/org# |  | [LOV](http://lov.okfn.org/dataset/lov/vocabs/org) | [Doc](https://www.w3.org/TR/vocab-org/) |
+| People | `vcard` | vCard | http://www.w3.org/2006/vcard/ns# |  | [LOV](http://lov.okfn.org/dataset/lov/vocabs/vcard) | [Doc](http://www.w3.org/TR/vcard-rdf/) |
+| Taxon | `dwc` | Darwin Core | http://rs.tdwg.org/dwc/terms/ | [VOWL](http://visualdataweb.de/webvowl/#iri=https://raw.githubusercontent.com/tdwg/dwc/master/rdf/dwcterms.rdf) |  | [Doc](http://rs.tdwg.org/dwc/terms/guides/rdf/) |
+| Taxon | `tc` | Taxon Concept | http://rs.tdwg.org/ontology/voc/TaxonConcept# | [VOWL](http://visualdataweb.de/webvowl/#iri=https://raw.githubusercontent.com/tdwg/ontology/master/ontology/voc/TaxonConcept.rdf) |  | [Doc](https://github.com/tdwg/rdf/blob/master/TCSBasedTaxon.md) |
+| Taxon | `tn`| Taxon Name | http://rs.tdwg.org/ontology/voc/TaxonName# | [VOWL](http://visualdataweb.de/webvowl/#iri=https://raw.githubusercontent.com/tdwg/ontology/master/ontology/voc/TaxonName.rdf) |  | [Doc](https://github.com/tdwg/rdf/blob/master/TCSBasedTaxon.md) |
+| Gene | `obi` | Ontology for Biomedical Investigations | http://purl.obolibrary.org/obo/obi# |  | [LOV](http://lov.okfn.org/dataset/lov/vocabs/obo) | [Doc](https://bioportal.bioontology.org/ontologies/OBI/) |
+| Gene | `so` | Sequence Ontology | # | [VOWL](http://visualdataweb.de/webvowl/#iri=https://raw.githubusercontent.com/obi-ontology/obi/v2017-02-22/obi_core.owl) | http://purl.obolibrary.org/obo/so# | [Doc](http://www.sequenceontology.org) |
+| Traits | `pato` | Phenotypic Traits Ontology | http://purl.obolibrary.org/obo/pato# | [VOWL](http://visualdataweb.de/webvowl/#iri=http://purl.obolibrary.org/obo/pato.owl) |  | [Doc](https://github.com/pato-ontology/pato/) |
+| Traits | `po` | Plant Ontology | http://purl.obolibrary.org/obo/po# | [VOWL](http://visualdataweb.de/webvowl/#iri=http://purl.obolibrary.org/obo/po.owl) |  | [Doc](http://obofoundry.org/ontology/po.html) |
 
 See also
 * [W3C vocabularies for describing people])
@@ -46,17 +50,10 @@ See also
 
 #### Gene
 
-* **[OBI]**: Ontology for Biomedical Investigations
 * **[GO]**: Gene Ontology
-* **[SO]**: Sequence Ontology
 * **[GONG]**: Gene Ontology Next Generation
 * **[MGED]**: Micro Array Gene Expression Data
 
-#### Phenotypic traits
-
-* **[PO]**: Plant Ontology
-* **[PATO]**: Phenotypic qualities
-
 ### Frameworks
 * **[GUID LSID]**: Global Unique Identifier Life Science ID
 * **[TCS]**: Taxonomic Concept (Transfer) Schema
@@ -110,7 +107,6 @@ See also
 [LinkedISA]:https://isa-tools.github.io/linkedISA/
 
 [GO]:http://www.geneontology.org/
-[PO]:http://obofoundry.org/ontology/po.html
 [GONG]:http://gong.man.ac.uk/
 [MGED]:http://mged.sourceforge.net/ontologies/MGEDontology.php
 [EML]:https://knb.ecoinformatics.org/#external//emlparser/docs/index.html