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standards · Changes

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Update standards state of the art. authored Jun 20, 2017 by Anthony Hombiat's avatar Anthony Hombiat
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standards.md
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......@@ -28,6 +28,7 @@
* **[SDD]**: Structure of Descriptive Data
* **[ABCD]**: Access to Biological Collections Data schema
* **[DwC]**: Darwin Core
* **[DwC-A]**: Darwin Core Archive
* **[ISA]**: Investigation, Study and Assay framework
* **[BioDBcore]**: generic description of the core attributes of biological databases
* **[TCS]**: Taxonomic Concept (Transfer) Schema
......@@ -39,9 +40,10 @@
* **[GONG]**: Gene Ontology Next Generation
* **[MGED]**: Micro Array Gene Expression Data
### Gene-oriented Markup languages
### Markup languages
* **[MAGE-ML]**: MicroArray Gene Expression Markup Language
* **[KGML]**: [KEGG] Kyoto Encyclopedia of Genes and Genomes Markup Language
* **[EML]**: Ecological Markup Language
### Tools
* **[Bio2RDF]**: Life Science Linked Data
......@@ -64,6 +66,7 @@
[SDD]:https://github.com/tdwg/wiki-archive/blob/master/twiki/data/SDD/WebHome.txt
[ABCD]:https://github.com/tdwg/wiki-archive/blob/master/twiki/data/ABCD/WebHome.txt
[DwC]:http://rs.tdwg.org/dwc/
[DwC-A]:
[ISA]:http://www.isacommons.org/
[BioDBcore]:http://biocuration.org/community/standards-biodbcore/
[TCS]:http://tdwg.napier.ac.uk/
......@@ -73,6 +76,7 @@
[PO]:http://obofoundry.org/ontology/po.html
[GONG]:http://gong.man.ac.uk/
[MGED]:http://mged.sourceforge.net/ontologies/MGEDontology.php
[EML]:https://knb.ecoinformatics.org/#external//emlparser/docs/index.html
[mage-ml]:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC126871/
[kgml]:http://www.genome.jp/kegg/xml/
......
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