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# The PhyloAlps Project
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[Home](home) |
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[Data](data) |
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[Standards](standards |
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[Model](model) |
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[Technologies](techno) |
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[User Profiles](profiles) |
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[Meetings](meetings)
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## Institutions
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* **[OBO Foundry]**: Open Biomedical Ontology Foundry
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* **[HCLSIG]**: W3C Health Care and Life Sciences Interest Group
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* **[TDWG]**: Biodiversity Information Standards group
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* **[BGCI]**: Botanic Gardens Conservation International
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* **[NCEI]**: National Center for Environmental Information
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* **[ISB]**: International Society for Biocuration
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* **[Species 2000]**
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* **[BioSharing]**
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## Standards & frameworks
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* **[LSID]**: Life Science ID
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* **[SPICE]**: Species 2000 Interoperability Co-ordination Environment
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* **[SDD]**: Structure of Descriptive Data
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* **[ABCD]**: Access to Biological Collections Data schema
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* **[DwC]**: Darwin Core
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* **[ISA]**: Investigation, Study and Assay framework
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* **[BioDBcore]**: generic description of the core attributes of biological databases
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* **[TCS]**: Taxonomic Concept (Transfer) Schema
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## Ontologies
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* **[GO]**: Gene Ontology
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* **[PO]**: Plant Ontology
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* **[GONG]**: Gene Ontology Next Generation
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* **[MGED]**: Micro Array Gene Expression Data
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## Gene-oriented Markup languages
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* **[MAGE-ML]**: MicroArray Gene Expression Markup Language
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* **[KGML]**: [KEGG] Kyoto Encyclopedia of Genes and Genomes Markup Language
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## Tools
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* **[Biocatalogue]**: The Life Science Web Services Registry
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* **[TSE]**: Taxonomic Search Engine
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* **[BioCASE]**: Biological Collection Access SErvice
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* **[iPhylo]**: Taxonomic id reconciliation with Google Refine
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* **[MNHN TaxRef Match]**: Taxonomic id reconciliation (work in progress)
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[OBO Foundry]:http://obofoundry.org/
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[HCLSIG]:https://www.w3.org/wiki/HCLSIG
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[TDWG]:http://www.tdwg.org/
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[BGCI]:https://www.bgci.org/
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[NCEI]:https://www.ncei.noaa.gov/
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[ISB]:http://biocuration.org/
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[Species 2000]:http://www.sp2000.org/
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[BioSharing]: https://biosharing.org/
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[LSID]:https://github.com/tdwg/guid-as
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[SPICE]:https://link.springer.com/chapter/10.1007/3-540-44469-6_92
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[SDD]:https://github.com/tdwg/wiki-archive/blob/master/twiki/data/SDD/WebHome.txt
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[ABCD]:https://github.com/tdwg/wiki-archive/blob/master/twiki/data/ABCD/WebHome.txt
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[DwC]:http://rs.tdwg.org/dwc/
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[ISA]:http://www.isacommons.org/
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[BioDBcore]:http://biocuration.org/community/standards-biodbcore/
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[TCS]:http://tdwg.napier.ac.uk/
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[GO]:http://www.geneontology.org/
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[PO]:http://obofoundry.org/ontology/po.html
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[GONG]:http://gong.man.ac.uk/
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[MGED]:http://mged.sourceforge.net/ontologies/MGEDontology.php
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[mage-ml]:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC126871/
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[kgml]:http://www.genome.jp/kegg/xml/
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[KEGG]:http://www.genome.jp/kegg/
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[Biocatalogue]:https://www.biocatalogue.org/
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[TSE]:http://taxonomicsearch.sourceforge.net/
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[BioCASE]:http://www.biocase.org/
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[iPhylo]:https://iphylo.blogspot.fr/2012/02/using-google-refine-and-taxonomic.html
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[MNHN TaxRef Match]:https://taxref.mnhn.fr/taxref-web/accueil |
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