#16
Réunion PhyloAlpsPhyloAlps/PhyloNorway Workshop à Tromso, Norvège
04-06/12/2018
Participants
- Adriana Alberti
- Inger Greve Alsos
- France Denoeud
- Eric Coissac
- Anthony Hombiat
- Sébastien Lavergne
Data
Model
- Add tag for the sequencing quality indicator
- Add software attribute for sequence/assemby
- Add a BOLD compliance indicator:
- Sample ID
- Museum ID/Field ID
- Associated collections
- Sample location
- Picture (= voucher)
Datasets
- Expose Django DB as RDF
- Integrate Androsace phenotypic traits data
- Integrate GBIF occurrences data
Versioning
- Method to go from one version to the next
- Method to update taxon from taxonomies
Quality
- Implement annotations interfaces
- Create multidimensional data quality indicator
Download
- embl files in archive
Taxonomy
Table
- Add project in the taxa interface
- Add family browsing in taxa
- Put the number of results up
- Replace the vernacular taxon name with the project name
- Some Species taxon are related to subspecies !
- Replace the "CBNA name" label with "Provider name"
Tree structure
- Allow the user to show/hide the no sample taxa
- Expand the node when there is only one way with samples
- Reset the search box when clicking a node
- Show a loader when clicking a node (to prevent multiple clicks)
- Plant/Animal button to change the root of the tree
- Show the path to the selected taxon in a clickable breadcrumb
- Go further to the right when a node is open if its children are outside the viewport
Name reconciliation
- Bridge the gap between taxon from different Taxonomies with:
- ontology matchers
- TNRS systems
- Each taxon must be linked to an instance of a the taxonomy concept which has release date
DNA Assembly
Template
- Add gene browser
- Allow some people to browse without seeing the link to the sequence
Graph
- Add legend for color, style, thickness
- Display infos in a box on the right with the tooltip info
Sampleset
- People can create a temporary sampleset and ask for the associated set of sequences by mail
- Add the sampleset creation feature
- session samplesets
- permanent samplesets
User roles
- Anonymous: can browse
- Project Member: can browse, edit
- Project Supervisor: can browse, edit, flag
- Administrator: can browse, edit, flag, manage members
Django Application
- Advanced search interface (see the Tropicos app)
Cartographic map
- Prevent the map dialog box to move when its link is clicked