The PhyloAlps Project

Home | Data | User Profiles | Technologies

Data types

• Text (DNA sequence)
• Photo (plant pictures)
• Tree structure (taxonomy)

Database System

• Small distributed relational databases
• SPARQL endpoint to query the data
• Mapping of relational data to RDF (W3C R2RML specification)

Data Providers

• NCBI's Entrez Programming Utilities (E-utilities)
  Nota:

NCBI places no restrictions on the use or distribution of the GenBank data. However, some submitters may claim patent, copyright, or other intellectual property rights in all or a portion of the data they have submitted.

• EMBL-EBI
  • Web Services
  • RDF platform Ensembl
• Biocatalogue

Gene Ontologies

W3C Health Care and Life Sciences Interest Group (HCLSIG)

• Gene Ontology (GO)
• Gene Ontology Next Generation (GONG) (broken)
• Micro Array Gene Expression Data (MGED)

Standards

• MicroArray Gene Expression Markup Language (MAGE-ML)
• KEGG Markup Language (KGML)