data.md

+# The PhyloAlps Project
+
+[Home](home.md) |
+[Data](data.md) |
+[User Profiles](profiles.md) |
+[Technologies](techno.md)
+
+## Data types
+* Text (DNA sequence)
+* Photo (plant pictures)
+* Tree structure (taxonomy)
+
+## Database System
+* Small distributed relational databases
+* [SPARQL] endpoint to query the data
+* Mapping of relational data to [RDF] ([W3C R2RML specification])
+
+## Data Providers
+* NCBI's *[Entrez Programming Utilities]* (E-utilities)  
+Nota:
+> NCBI places no restrictions on the use or distribution of the GenBank data. However, some submitters may claim patent, copyright, or other intellectual property rights in all or a portion of the data they have submitted.
+* EMBL-EBI
+  * [Web Services]
+  * RDF platform [Ensembl]
+* [Biocatalogue]
+
+## Gene Ontologies
+*W3C Health Care and Life Sciences Interest Group ([HCLSIG])*
+* Gene Ontology ([GO])
+* Gene Ontology Next Generation ([GONG]) (broken)
+* Micro Array Gene Expression Data ([MGED])
+
+## Standards
+* MicroArray Gene Expression Markup Language ([MAGE-ML])
+* KEGG Markup Language ([KGML])
+
+[sparql]:https://www.w3.org/TR/rdf-sparql-query/
+[rdf]:https://www.w3.org/RDF/
+[w3c r2rml specification]:https://www.w3.org/TR/r2rml/
+[entrez programming utilities]:https://www.ncbi.nlm.nih.gov/books/NBK25501/
+[web services]:http://www.ebi.ac.uk/Tools/webservices/
+[Ensembl]:https://www.ebi.ac.uk/rdf/documentation/ensembl
+[biocatalogue]:https://www.biocatalogue.org/
+[hclsig]:https://www.w3.org/wiki/HCLSIG
+[GO]:http://www.geneontology.org/
+[GONG]:http://gong.man.ac.uk/
+[MGED]:http://mged.sourceforge.net/ontologies/MGEDontology.php
+[mage-ml]:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC126871/
+[kgml]:http://www.genome.jp/kegg/xml/