biblio

This is an old version of this page. You can view the most recent version or browse the history.

The PhyloAlps Project

Bibliography

Download the bibliography in .bibtex format

Hasnain, A., Mehmood, Q., Sana e Zainab, S., Saleem, M., Warren, C., Zehra, D., … Rebholz-Schuhmann, D. (2017). BioFed: federated query processing over life sciences linked open data. Journal of Biomedical Semantics, 8(1), 13. https://doi.org/10.1186/s13326-017-0118-0
Coissac, E., Hollingsworth, P. M., Lavergne, S., & Taberlet, P. (2016). From barcodes to genomes: extending the concept of DNA barcoding. Molecular Ecology, 25(7), 1423–1428. https://doi.org/10.1111/mec.13549
Bandrowski, A., Brinkman, R., Brochhausen, M., Brush, M. H., Bug, B., Chibucos, M. C., … Zheng, J. (2016). The Ontology for Biomedical Investigations. PloS One, 11(4), e0154556. https://doi.org/10.1371/journal.pone.0154556
ITIS. (2015). ITIS Data Model. Retrieved from https://www.itis.gov/pdf/ITIS_ConceptualModelEntityDefinition.pdf
Hinchliff, C. E., Smith, S. A., Allman, J. F., Burleigh, J. G., Chaudhary, R., Coghill, L. M., … Cranston, K. A. (2015). Synthesis of phylogeny and taxonomy into a comprehensive tree of life. Proceedings of the National Academy of Sciences, 112(41), 12764–12769. https://doi.org/10.1073/pnas.1423041112
Robertson, T., Döring, M., Guralnick, R., Bloom, D., Wieczorek, J., Braak, K., … Desmet, P. (2014). The GBIF Integrated Publishing Toolkit: Facilitating the Efficient Publishing of Biodiversity Data on the Internet. PLoS ONE, 9(8), e102623. https://doi.org/10.1371/journal.pone.0102623
TDWG. (2013). Report of the TDWG Vocabulary Management Task Group (VoMaG). https://doi.org/10.13140/RG.2.1.1503.7920
Anguita, A., García-Remesal, M., de la Iglesia, D., & Maojo, V. (2013). NCBI2RDF: Enabling Full RDF-Based Access to NCBI Databases. BioMed Research International, 2013, 1–9. https://doi.org/10.1155/2013/983805
Federhen, S. (2012). The NCBI Taxonomy database. Nucleic Acids Research, 40(D1), 136–145. https://doi.org/10.1093/nar/gkr1178
Wieczorek, J., Bloom, D., Guralnick, R., Blum, S., Döring, M., Giovanni, R., … Vieglais, D. (2012). Darwin Core: An Evolving Community-Developed Biodiversity Data Standard. PLoS ONE, 7(1), e29715. https://doi.org/10.1371/journal.pone.0029715
Sansone, S.-A., Rocca-Serra, P., Field, D., Maguire, E., Taylor, C., Hofmann, O., … Hide, W. (2012). Toward interoperable bioscience data. Nature Genetics, 44(2), 121–126. https://doi.org/10.1038/ng.1054
Gaudet, P., Bairoch, A., Field, D., Sansone, S.-A., Taylor, C., Attwood, T. K., … Yamasaki, C. (2011). Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Research, 39(Database), D7–D10. https://doi.org/10.1093/nar/gkq1173
Goff, S. A., Vaughn, M., McKay, S., Lyons, E., Stapleton, A. E., Gessler, D., … Stanzione, D. (2011). The iPlant Collaborative: Cyberinfrastructure for Plant Biology. Frontiers in Plant Science, 2. https://doi.org/10.3389/fpls.2011.00034
Constable, H., Guralnick, R., Wieczorek, J., Spencer, C., & Peterson, A. T. (2010). VertNet: A New Model for Biodiversity Data Sharing. PLoS Biology, 8(2), e1000309. https://doi.org/10.1371/journal.pbio.1000309
TDWG. (2010). TDWG GUID Applicability Statement. Retrieved from https://github.com/tdwg/guid-as/blob/master/guid/applicability_statement.doc
TDWG. (2009). TDWG Life Sciences Identifiers (LSID) Applicability Statement. Retrieved from https://github.com/tdwg/guid-as/blob/master/lsid/applicability_statement.doc
Page, R. D. (2008). LSID Tester, a tool for testing Life Science Identifier resolution services. Source Code for Biology and Medicine, 3(1), 2. https://doi.org/10.1186/1751-0473-3-2
Karp, D. R., Carlin, S., Cook-Deegan, R., Ford, D. E., Geller, G., Glass, D. N., … Sugarman, J. (2008). Ethical and Practical Issues Associated with Aggregating Databases. PLoS Medicine, 5(9), e190. https://doi.org/10.1371/journal.pmed.0050190
Ratnasingham, S., & Hebert, P. D. N. (2007). BARCODING: bold: The Barcode of Life Data System. Molecular Ecology Notes, 7(3), 355–364. https://doi.org/10.1111/j.1471-8286.2007.01678.x
Kennedy, J., Hyam, R., Kukla, R., & Paterson, T. (2006). Standard Data Model Representation for Taxonomic Information. OMICS: A Journal of Integrative Biology, 10(2), 220–230. https://doi.org/10.1089/omi.2006.10.220
Page, R. D. (2005). A Taxonomic Search Engine: Federating taxonomic databases using web services. BMC Bioinformatics, 6(1), 48. https://doi.org/10.1186/1471-2105-6-48
OMG. (2004). Life Science Identifiers Specifications. Retrieved from http://www.omg.org/cgi-bin/doc?dtc/04-05-01.pdf
TDWG. (2004). Taxonomic Concept Schema. Retrieved from http://tdwg.napier.ac.uk/doc/tdwg_tcs.pdf
National Human Genome Research Institute. (2002). Report from the NIH/NIAID/Wellcome Trust Workshop on Model Organism Databases. Retrieved from https://www.genome.gov/10006356/mod-workshop-report/
Jones, A. C., Xu, X., Pittas, N., Gray, W. A., Fiddian, N. J., White, R. J., … Brandt, S. M. (2000). SPICE: A Flexible Architecture for Integrating Autonomous Databases to Comprise a Distributed Catalogue of Life. In M. Ibrahim, J. Küng, & N. Revell (Eds.), Database and Expert Systems Applications: 11th International Conference, DEXA 2000 London, UK, September 4--8, 2000 Proceedings (pp. 981–992). Berlin, Heidelberg: Springer Berlin Heidelberg. https://doi.org/10.1007/3-540-44469-6_92