Issues · OBITools / OBITools

obisilva fails with --ssu option

#32 · opened Apr 20, 2017 by Philippe Bordron
- CLOSED
- 1
updated Sep 29, 2017
Missing esmre module in requirements.txt

#31 · opened Mar 20, 2017 by Philippe Bordron
- CLOSED
- 1
updated Sep 29, 2017
Missing shebang in extractreads.py and extractreads2.py

#30 · opened Mar 20, 2017 by Philippe Bordron
- CLOSED
- 1
updated Jan 18, 2020
Missing mitochondrial genomes

#29 · opened Feb 16, 2017 by Filipe Figueiredo
- CLOSED
- 1
updated Sep 29, 2017
Obiclean index error

#27 · opened Oct 30, 2016 by Katrina West
- CLOSED
- 4
updated Jun 20, 2024
Installation issue

#26 · opened Oct 26, 2016 by Katrina West
- CLOSED
- 5
updated Sep 29, 2017
Error running obiclean

#24 · opened Jul 28, 2016 by Frederik Seersholm
- CLOSED
- 1
updated Sep 29, 2017
Bug in obiselect following commit 46b446f0

#23 · opened Feb 17, 2016 by Aurélie Bonin Bug Critical
- CLOSED
- 1
updated Sep 29, 2017
Supin bug in obitaxonomy

#20 · opened Jan 07, 2016 by Eric Coissac Bug
- CLOSED
- 0
updated Sep 29, 2017
obiconvert: GenBank/FASTA input to ecoPCR database

#18 · opened Dec 22, 2015 by Nicholas Lim
- CLOSED
- 0
updated Sep 29, 2017
ecoPCR issue

#17 · opened Dec 14, 2015 by Antonino Malacrinò
- CLOSED
- 4
updated Sep 29, 2017
Add a new tools selecting the most aboundant sequences per samples

#16 · opened Nov 12, 2015 by Eric Coissac feature
- CLOSED
- 1
updated Sep 29, 2017
UTF-8 installation problem

#14 · opened Oct 01, 2015 by Celine Mercier Bug
- CLOSED
- 1
updated Sep 29, 2017
obiclean bug

#13 · opened Aug 05, 2015 by Celine Mercier Bug Critical
- CLOSED
- 0
updated Sep 29, 2017
Obiconvert error (in the _ecoSeqPacker function)

#21 · opened Feb 08, 2016 by Celine Mercier Bug
- CLOSED
- 3
updated Jan 18, 2019
skip option lead illuminapairedend to crash

#11 · opened Jul 11, 2015 by Frédéric Boyer Bug Critical
- CLOSED
- 1
updated Sep 29, 2017
obiaddtaxids: add a parser for the UNITE 'general FASTA release' format

#9 · opened Jun 11, 2015 by Celine Mercier feature
- CLOSED
- 0
updated Sep 29, 2017
obiconvert bug

#8 · opened Jun 02, 2015 by Celine Mercier Bug
- CLOSED
- 0
updated Sep 29, 2017
Another installation problem, with setup.py

#7 · opened Jun 01, 2015 by Celine Mercier Bug
- CLOSED
- 1
updated Sep 29, 2017
Installation problem

#6 · opened Jun 01, 2015 by Celine Mercier Bug
- CLOSED
- 2
updated Sep 29, 2017
Branch names

#5 · opened May 28, 2015 by Eric Coissac Critical
- CLOSED
- 3
updated Sep 29, 2017
--rank should be --seq_rank in obiannotate

#3 · opened May 20, 2015 by Ghost User
- CLOSED
- 2
updated Jan 17, 2018
ecoPCR help

#1 · opened May 13, 2015 by Aurélie Bonin Bug documentation
- CLOSED
- 3
updated Jan 17, 2018
Why isn't 'obiclean_headcount > 0' the same as 'obiclean_head == True'?

#34 · opened Jun 20, 2018 by Dani Díaz de Quijano
- CLOSED
- 1
updated Nov 19, 2018
ecotag: Assertion Error

#37 · opened Jan 07, 2019 by Charles Baillie
- CLOSED
- 1
updated May 09, 2019
Error in building the reference database

#38 · opened Jan 18, 2019 by Harsh Shukla
- CLOSED
- 24
updated Oct 02, 2019
ecoTag hanging

#39 · opened Jan 31, 2019 by Patrick Freeman
- CLOSED
- 2
updated Feb 11, 2019
Issue when running obiconvert -d ncbi --ecopcrdb-output

#40 · opened Feb 11, 2019 by Alejandro Maeda Obregon
- CLOSED
- 1
updated May 09, 2019
Error when running Ecotag

#41 · opened Feb 19, 2019 by Tania Valdivia-Carrillo
- CLOSED
- 1
updated May 09, 2019
ngsfilter: AssertionError: tag pair

#42 · opened May 06, 2019 by Omer Golan
- CLOSED
- 1
updated May 09, 2019
Trouble with ecoPCR/ecotag

#48 · opened Sep 13, 2019 by Matthew Hopken
- CLOSED
- 8
updated Apr 08, 2023
Could not import sequence id: AE005172; (error raised: 'NoneType' object has no attribute 'group' )

#49 · opened Oct 03, 2019 by Marc-Olivier Beausoleil
- CLOSED
- 9
updated Jun 20, 2024
ecoPCR freezes without finishing.

#51 · opened Nov 18, 2019 by Brian Gill
- CLOSED
- 1
updated Nov 19, 2019
error message in obicomplement

#52 · opened Dec 12, 2019 by Lucie Zinger
- CLOSED
- 0
updated Dec 12, 2019
ngsfilter

#53 · opened Jan 17, 2020 by Gabriele Cananzi
- CLOSED
- 0
updated Jan 23, 2020
obiconvert issue

#61 · opened Feb 08, 2021 by Gabriele Cananzi
- CLOSED
- 0
updated Feb 10, 2021