Error running obiclean
I get the following error running obiclean:
Exception AttributeError: "'array.array' object has no attribute '_BYTES'" in 'obitools.align._upperbond.isLCSReachable' ignored
Running the wolf tutorial, this results in an output file with the first header like this:
>HELIUM_000100422_612GNAAXX:7:22:8540:14708#0/1_CONS_SUB_SUB_CMP merged_sample={'29a_F260619': 4697, '15a_F730814': 7638}; obiclean_count={'29a_F260619': 4697, '15a_F730814': 7638}; obiclean_head=True; obiclean_cluster={'29a_F260619': 'HELIUM_000100422_612GNAAXX:7:22:8540:14708#0/1_CONS_SUB_SUB_CMP', '15a_F730814': 'HELIUM_000100422_612GNAAXX:7:22:8540:14708#0/1_CONS_SUB_SUB_CMP'}; count=12335; obiclean_internalcount=0; obiclean_status={'29a_F260619': 's', '15a_F730814': 's'}; obiclean_samplecount=2; obiclean_headcount=0; obiclean_singletoncount=2;
I have just installed OBItools and the rest of the commands seem to work fine. As far as I can tell the error is in the script '_upperbond.pyx' - perhaps within the function 'buildTable'. If you have any suggestions to solve this error, it would be greatly appreciated. Thanks!
OS: OS X 10.11.5 Python: 2.7.12