Issue when running obiconvert -d ncbi --ecopcrdb-output
Hello, I am currently using Obitools on a Mac to make my primers, but I have been getting to this issue in which something happens with the code and the taxaid
obiconvert -d ncbi --ecopcrdb-output=mito.insecta mito.insecta.fasta Reading binary taxonomy database... [INFO : Taxon alias file found] [INFO : Local taxon file not found] Taxonomical tree read [Errno 2] No such file or directory: 'ncbi.pdx' [INFO : Preferred taxon name file not found] ok Writing the taxonomy file... Ok mito.insecta.fasta 0.5 % |/ ] remain : 00:00:00Traceback (most recent call last): File "/miniconda2/bin/obiconvert", line 52, in writer(entry) File "/miniconda2/lib/python2.7/site-packages/obitools/format/options.py", line 371, in sequenceWriter writer.put(sequence) File "/miniconda2/lib/python2.7/site-packages/obitools/ecopcr/sequence.py", line 173, in put self._file.write(self._ecoSeqPacker(sequence)) File "/miniconda2/lib/python2.7/site-packages/obitools/ecopcr/sequence.py", line 127, in _ecoSeqPacker raise Exception("Taxonomy error for %s: %s"%(seq.id, "taxonomy is missing" if self._taxonomy is None else "sequence has no taxid" if 'taxid' not in seq else "wrong taxid")) Exception: Taxonomy error for MF925724.1: sequence has no taxid
Has someone encountered this issue before? I have no idea how to get around this. I also tried to uninstall all packages but that does not solve anything. Any help would be appreciated.