obiclean bug
Getting this with 2 different datasets:
obiclean -r 0.75 -s sample test1000.fasta > test.fasta
test1000.fasta 97.2 % |################################################- ] remain : 00:00:00
Alignment : 714 x 720 -> 001 91.7 % |#############################################\ ] remain : 00:00:00
Sample count : 13
Clustering sample : A 7.7 % |###- ] remain : 00:00:00Traceback (most recent call last):
File "/Library/Frameworks/Python.framework/Versions/2.7/bin/obiclean", line 238, in <module>
c=sampleOccurrences[i][sample]
TypeError: string indices must be integers, not str