The PhyloAlps Project

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Technologies

Data Management System

• Small distributed relational databases: PostgreSQL
• SPARQL endpoint to query the data
• Mapping of relational data to RDF (R2RML implementations from the RDB2RDF Working Group):
  • D2RQ (Java)
  • R2D2 (PHP)
  • OpenLink Virtuoso (C)
  • RDF4J (aka Sesame) + r2rml-api-rdf4j-bridge (Java)
  • Allegrograph (Common Lisp)
  • MarkLogic (C++)

Dataviz

• ElasticSearch + Kibana
• D3
• Jupyter

Back end

• Server-side JavaScript (NodeJS + MongoDB)
• PHP framework (Symfony or CakePHP)
• Python
• Java

Front end

• HTML5
• CSS3 framework + CSS preprocessor (SASS/LESS)
• JavaScript + jQuery

Web Server

• Apache HTTP Server
• NGINX

Continuous Integration

• Build automation tools (Apache Maven/Apache Ant/Gradle)
• CI Server (Jenkins/Travis/Buildbot/Strider/Gitlab CI/TeamCity)