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data

The PhyloAlps Project

PhyloAlps Herbarium (work in progress), QR code (species and DNA sequence identification)
CBNA Herbarium: Conservatoire Botanique National Alpin à Briançon
GBIF: Global Biodiversity Information Facility (occurrences, observations, /!\ coverage)
Androsace: reference phenotypic traits for Alpine plants
IFB: Institut Français pour la Bioinformatique
FRB: Fondation pour la Recherche en Biodiversité
BOLD: pas le génome complet (marqueurs taxonomiques, 2 gènes matK et rbcL)
INSD: International Nucleotide Sequence Database Collaboration :
- NCBI GenBank: National Center for Biotechnology Information
  - Entrez Programming Utilities (E-utilities)
- EMBL: European Molecular Biology Laboratory
  - EMBL-EBI Web Services
  - EMBL-EBI RDF platform Ensembl
- DDBJ: DNA DB of Japan European Molecular Biology Lab (down for the moment)
  - WABI: Web API for BIology
UniProtKB (Swiss-Prot) utilise EMBL
Phylota: plants browser
FloraAlpina (paper version only)
Tela Botanica: association de botanique de référence pour la botanique numérique
- eFlore
Plant list (cf. Kew project: exons sequencing)
Biocatalogue: The Life Science Web Services Registry

Gene ontologies
- HCLSIG: W3C Health Care and Life Sciences Interest Group
- GO: Gene Ontology
- GONG: Gene Ontology Next Generation
- MGED: Micro Array Gene Expression Data
Standards
- MAGE-ML: MicroArray Gene Expression Markup Language
- KGML: KEGG Markup Language

Multiple stages data validation process
- syntactic & semantic check (automatic)
- outlier check (semi-automatic)
Multi-criteria data trust model
Issue tracking system
Bridge the gap between multiple taxonomic referentials taxonomiques:
- NCBI
- Plant List
- Plant ref
Version control