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data · Changes

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Minor changes on meeting page. authored Apr 20, 2017 by Anthony Hombiat's avatar Anthony Hombiat
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data.md
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......@@ -62,19 +62,21 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only
**[EMBL-EBI Ensembl]** | Taxonomy, DNA data bank | Third Party | REST API, SPARQL endpoint | Clients available for Perl/Python/Java
**[DDBJ WABI]** | Taxonomy, DNA data bank | © | REST API | Some docs in Japanese
[Phylota] | DNA data bank | | HMI |
[iPlant TNRS] | Nomenclature, synonyms | Available | REST API | Fuzzy name matching
[MNHN TaxRef] | Taxonomy | Available | |
[The Plant list] | Nomenclature, synonyms | ![CC BY-NC-ND] | HMI | > 10 data sources, 3-levels trust model
[Tela Botanica eFlore] | Nomenclature, synonyms | ![CC BY-NC-SA] | REST API | Beta version
[FCBN SIFlore] | Distribution map | Unavailable | HMI |
[EOL] | Nomenclature | Third party | REST API |
[Mobot APG] | Taxonomy | | HTML Web pages |
[OpenTreeOfLife Taxonomy] | Taxonomy | | REST API | Based on the NCBI taxonomy and the GBIF Backbone taxonomy
## Taxonomic Name Resolution Services
Name | Sources | Example |Comment
--- | --- | ---
**[PlantMiner]** | The Plant List | [http://www.plantminer.com/tpl?taxon=Leontopodium%20alpinum]
--- | --- | --- | ---
**[PlantMiner]** | The Plant List, Brazilian Flora 2020 | [http://www.plantminer.com/tpl?taxon=Leontopodium%20alpinum] |
**[iPlant TNRS]** | MoBoT Tropicos, NCBI, KEW, ILDIS, USDA Plants DB, The Global Compositae Checklist | http://tnrs.iplantc.org/tnrsm-svc/matchNames?names=Leontopodium%20alpinum |
**[OpenTreeOfLife Taxonomy]** | NCBI taxonomy, GBIF Backbone taxonomy | curl -X POST https://api.opentreeoflife.org/v3/tnrs/match_names -H "content-type:application/json" -d '{"names":["Aster","Symphyotrichum","Barnadesia"]}' |
* **[GlobalNameResolver]** | [182 sources](http://resolver.globalnames.org/data_sources) | http://resolver.globalnames.org/name_resolvers.json?names=Leontopodium%20alpinum |
* **[GBIF Species API]** | [54 sources](http://www.gbif.org/dataset/d7dddbf4-2cf0-4f39-9b2a-bb099caae36c) | http://api.gbif.org/v1/species/match?name=Leontopodium%20alpinum |
## Data sharing
* Institutions
......@@ -109,8 +111,6 @@ Name | Sources | Example |Comment
* **[BioCASE]**: Biological Collection Access SErvice
* **[iPhylo]**: Taxonomic id reconciliation with Google Refine
* **[MNHN TaxRef Match]**: Taxonomic id reconciliation (work in progress)
* **[GlobalNameResolver]**: Scientific name reconciliation
* **[GBIF Species API]**: GBIF Species scientific name matching
## Data quality
* Multiple stages data validation process
......
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