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data.md
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...@@ -32,9 +32,9 @@ ...@@ -32,9 +32,9 @@
* Taxon coverage * Taxon coverage
## Data providers ## Data providers
* **SAJF PhyloAlps Herbarium** (work in progress), QR code (species and DNA sequence identification) * **[SAJF]**: Station Alpine Joseph Fourier
* **[CBNA] Herbarium**: Conservatoire Botanique National Alpin à Briançon * **[CBNA]**: Conservatoire Botanique National Alpin à Briançon
* **LECA [Androsace]**: Phenotypic traits for Alpine plants * **[LECA]**: Laboratoire d'ECologie Alpine
* **[GBIF]**: Global Biodiversity Information Facility (occurrences, observations, /!\ coverage) * **[GBIF]**: Global Biodiversity Information Facility (occurrences, observations, /!\ coverage)
* **[IFB]**: Institut Français pour la Bioinformatique * **[IFB]**: Institut Français pour la Bioinformatique
* **[FRB]**: Fondation pour la Recherche en Biodiversité * **[FRB]**: Fondation pour la Recherche en Biodiversité
...@@ -57,11 +57,11 @@ ...@@ -57,11 +57,11 @@
Name | Data type | Availability | Access | Comment Name | Data type | Availability | Access | Comment
--- | --- | --- | --- | --- --- | --- | --- | --- | ---
PhyloAlps Herbarium | Nomenclature, location, photos | SAJF data | QR codes | Work in progress SAJF PhyloAlps Herbarium | Nomenclature, location, photos | SAJF data | QR codes | Work in progress
[CBNA Herbarium] | Nomenclature, location, photos | ![CC BY] | via GBIF | [CBNA Herbarium] | Nomenclature, location, photos | ![CC BY] | via GBIF |
**[GBIF]** | Occurrences (nomenclature, location, photos) | ![CC0] -> ![CC BY-NC] | REST API | Crowdsourcing quality **[GBIF]** | Occurrences (nomenclature, location, photos) | ![CC0] -> ![CC BY-NC] | REST API | Crowdsourcing quality
**[Androsace]** | Phenotypic traits | LECA data | HMI | **[LECA Androsace]** | Phenotypic traits | LECA data | HMI |
FloraAlpina | Phenotypic traits | © | Book | Paper version only FloraAlpina | Phenotypic traits of Alpine plants | © | Book | Paper version only
**[BOLD]** | DNA barcoding | © -> ![CC BY-NC-ND] | REST API | **[BOLD]** | DNA barcoding | © -> ![CC BY-NC-ND] | REST API |
**[NCBI GenBank E-utilities]** | Taxonomy, DNA data bank | [ODbL] | REST API | **[NCBI GenBank E-utilities]** | Taxonomy, DNA data bank | [ODbL] | REST API |
**[EMBL-EBI Ensembl]** | Taxonomy, DNA data bank | Third Party | REST API, SPARQL endpoint | Clients available for Perl/Python/Java **[EMBL-EBI Ensembl]** | Taxonomy, DNA data bank | Third Party | REST API, SPARQL endpoint | Clients available for Perl/Python/Java
...@@ -124,18 +124,14 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only ...@@ -124,18 +124,14 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only
* [Mobot APG] * [Mobot APG]
* Version control * Version control
[sparql]:https://www.w3.org/TR/rdf-sparql-query/ [SAJF]:https://www.jardinalpindulautaret.fr/accueil
[rdf]:https://www.w3.org/RDF/ [LECA]:http://www-leca.ujf-grenoble.fr/
[w3c r2rml specification]:https://www.w3.org/TR/r2rml/
[entrez programming utilities]:https://www.ncbi.nlm.nih.gov/books/NBK25501/
[EMBL-EBI web services]:http://www.ebi.ac.uk/Tools/webservices/
[EMBL-EBI RDF platform Ensembl]:https://www.ebi.ac.uk/rdf/documentation/ensembl
[biocatalogue]:https://www.biocatalogue.org/ [biocatalogue]:https://www.biocatalogue.org/
[MoBot]:http://www.mobot.org/ [MoBot]:http://www.mobot.org/
[MNHN]:https://www.mnhn.fr/ [MNHN]:https://www.mnhn.fr/
[CBNA]:http://www.cbn-alpin-biblio.fr/ [CBNA]:http://www.cbn-alpin-biblio.fr/
[GBIF]:http://www.gbif.org/ [GBIF]:http://www.gbif.org/
[Androsace]:http://androsace.ujf-grenoble.fr/ [LECA Androsace]:http://androsace.ujf-grenoble.fr/
[IFB]:https://www.france-bioinformatique.fr/ [IFB]:https://www.france-bioinformatique.fr/
[FRB]:http://www.fondationbiodiversite.fr/fr/ [FRB]:http://www.fondationbiodiversite.fr/fr/
[BOLD]:http://www.boldsystems.org/ [BOLD]:http://www.boldsystems.org/
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