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* Taxon coverage
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## Data providers
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* **SAJF PhyloAlps Herbarium** (work in progress), QR code (species and DNA sequence identification)
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* **[CBNA] Herbarium**: Conservatoire Botanique National Alpin à Briançon
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* **LECA [Androsace]**: Phenotypic traits for Alpine plants
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* **[SAJF]**: Station Alpine Joseph Fourier
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* **[CBNA]**: Conservatoire Botanique National Alpin à Briançon
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* **[LECA]**: Laboratoire d'ECologie Alpine
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* **[GBIF]**: Global Biodiversity Information Facility (occurrences, observations, /!\ coverage)
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* **[IFB]**: Institut Français pour la Bioinformatique
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* **[FRB]**: Fondation pour la Recherche en Biodiversité
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... | ... | @@ -57,11 +57,11 @@ |
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Name | Data type | Availability | Access | Comment
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--- | --- | --- | --- | ---
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PhyloAlps Herbarium | Nomenclature, location, photos | SAJF data | QR codes | Work in progress
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SAJF PhyloAlps Herbarium | Nomenclature, location, photos | SAJF data | QR codes | Work in progress
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[CBNA Herbarium] | Nomenclature, location, photos | ![CC BY] | via GBIF |
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**[GBIF]** | Occurrences (nomenclature, location, photos) | ![CC0] -> ![CC BY-NC] | REST API | Crowdsourcing quality
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**[Androsace]** | Phenotypic traits | LECA data | HMI |
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FloraAlpina | Phenotypic traits | © | Book | Paper version only
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**[LECA Androsace]** | Phenotypic traits | LECA data | HMI |
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FloraAlpina | Phenotypic traits of Alpine plants | © | Book | Paper version only
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**[BOLD]** | DNA barcoding | © -> ![CC BY-NC-ND] | REST API |
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**[NCBI GenBank E-utilities]** | Taxonomy, DNA data bank | [ODbL] | REST API |
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**[EMBL-EBI Ensembl]** | Taxonomy, DNA data bank | Third Party | REST API, SPARQL endpoint | Clients available for Perl/Python/Java
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... | ... | @@ -124,18 +124,14 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
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* [Mobot APG]
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* Version control
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[sparql]:https://www.w3.org/TR/rdf-sparql-query/
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[rdf]:https://www.w3.org/RDF/
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[w3c r2rml specification]:https://www.w3.org/TR/r2rml/
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[entrez programming utilities]:https://www.ncbi.nlm.nih.gov/books/NBK25501/
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[EMBL-EBI web services]:http://www.ebi.ac.uk/Tools/webservices/
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[EMBL-EBI RDF platform Ensembl]:https://www.ebi.ac.uk/rdf/documentation/ensembl
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[SAJF]:https://www.jardinalpindulautaret.fr/accueil
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[LECA]:http://www-leca.ujf-grenoble.fr/
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[biocatalogue]:https://www.biocatalogue.org/
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[MoBot]:http://www.mobot.org/
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[MNHN]:https://www.mnhn.fr/
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[CBNA]:http://www.cbn-alpin-biblio.fr/
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[GBIF]:http://www.gbif.org/
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[Androsace]:http://androsace.ujf-grenoble.fr/
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[LECA Androsace]:http://androsace.ujf-grenoble.fr/
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[IFB]:https://www.france-bioinformatique.fr/
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[FRB]:http://www.fondationbiodiversite.fr/fr/
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[BOLD]:http://www.boldsystems.org/
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