... | ... | @@ -38,14 +38,11 @@ |
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* **[GBIF]**: Global Biodiversity Information Facility (occurrences, observations, /!\ coverage)
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* **[IFB]**: Institut Français pour la Bioinformatique
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* **[FRB]**: Fondation pour la Recherche en Biodiversité
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* **[BOLD]**: metabarcoding (not complete genome, taxonomic markers, 2 genes: matK et rbcL)
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* **[INSD]**: International Nucleotide Sequence Database collaboration :
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* **[NCBI]**: National Center for Biotechnology Information
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* **[EMBL]**: European Molecular Biology Laboratory
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* **[DDBJ]**: DNA DB of Japan European Molecular Biology Lab (down for the moment)
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* **[Tela Botanica]**: association de botanique de référence pour la botanique numérique
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* **[The Plant list]** (cf. [Kew project]: exons sequencing)
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* **[Biocatalogue]**: The Life Science Web Services Registry
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* **[USDA]**: United States Department of Agriculture
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* **[MoBot]**: Missouri Botanical garden
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* **[MNHN]**: Musée National d'Histoire Naturelle
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... | ... | @@ -59,7 +56,7 @@ SAJF PhyloAlps Herbarium | Nomenclature, location, photos | SAJF data | QR codes |
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**[GBIF]** | Occurrences (nomenclature, location, photos) | ![CC0] -> ![CC BY-NC] | REST API | Crowdsourcing quality
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**[LECA Androsace]** | Phenotypic traits | LECA data | HMI |
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FloraAlpina | Phenotypic traits of Alpine plants | © | Book | Paper version only
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**[BOLD]** | DNA barcoding | © -> ![CC BY-NC-ND] | REST API |
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**[BOLD]** | DNA barcoding | © -> ![CC BY-NC-ND] | REST API | not complete genome, taxonomic markers, 2 genes: matK et rbcL
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**[NCBI GenBank E-utilities]** | Taxonomy, DNA data bank | [ODbL] | REST API |
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**[EMBL-EBI Ensembl]** | Taxonomy, DNA data bank | Third Party | REST API, SPARQL endpoint | Clients available for Perl/Python/Java
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**[DDBJ WABI]** | Taxonomy, DNA data bank | © | REST API | Some docs in Japanese
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... | ... | @@ -102,6 +99,7 @@ FloraAlpina | Phenotypic traits of Alpine plants | © | Book | Paper version onl |
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* **[MAGE-ML]**: MicroArray Gene Expression Markup Language
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* **[KGML]**: [KEGG] Kyoto Encyclopedia of Genes and Genomes Markup Language
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* Tools
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* **[Biocatalogue]**: The Life Science Web Services Registry
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* **[TSE]**: Taxonomic Search Engine
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* **[BioCASE]**: Biological Collection Access SErvice
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* **[iPhylo]**: Taxonomic id reconciliation with Google Refine
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