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...@@ -38,14 +38,11 @@ ...@@ -38,14 +38,11 @@
* **[GBIF]**: Global Biodiversity Information Facility (occurrences, observations, /!\ coverage) * **[GBIF]**: Global Biodiversity Information Facility (occurrences, observations, /!\ coverage)
* **[IFB]**: Institut Français pour la Bioinformatique * **[IFB]**: Institut Français pour la Bioinformatique
* **[FRB]**: Fondation pour la Recherche en Biodiversité * **[FRB]**: Fondation pour la Recherche en Biodiversité
* **[BOLD]**: metabarcoding (not complete genome, taxonomic markers, 2 genes: matK et rbcL)
* **[INSD]**: International Nucleotide Sequence Database collaboration : * **[INSD]**: International Nucleotide Sequence Database collaboration :
* **[NCBI]**: National Center for Biotechnology Information * **[NCBI]**: National Center for Biotechnology Information
* **[EMBL]**: European Molecular Biology Laboratory * **[EMBL]**: European Molecular Biology Laboratory
* **[DDBJ]**: DNA DB of Japan European Molecular Biology Lab (down for the moment) * **[DDBJ]**: DNA DB of Japan European Molecular Biology Lab (down for the moment)
* **[Tela Botanica]**: association de botanique de référence pour la botanique numérique * **[Tela Botanica]**: association de botanique de référence pour la botanique numérique
* **[The Plant list]** (cf. [Kew project]: exons sequencing)
* **[Biocatalogue]**: The Life Science Web Services Registry
* **[USDA]**: United States Department of Agriculture * **[USDA]**: United States Department of Agriculture
* **[MoBot]**: Missouri Botanical garden * **[MoBot]**: Missouri Botanical garden
* **[MNHN]**: Musée National d'Histoire Naturelle * **[MNHN]**: Musée National d'Histoire Naturelle
...@@ -59,7 +56,7 @@ SAJF PhyloAlps Herbarium | Nomenclature, location, photos | SAJF data | QR codes ...@@ -59,7 +56,7 @@ SAJF PhyloAlps Herbarium | Nomenclature, location, photos | SAJF data | QR codes
**[GBIF]** | Occurrences (nomenclature, location, photos) | ![CC0] -> ![CC BY-NC] | REST API | Crowdsourcing quality **[GBIF]** | Occurrences (nomenclature, location, photos) | ![CC0] -> ![CC BY-NC] | REST API | Crowdsourcing quality
**[LECA Androsace]** | Phenotypic traits | LECA data | HMI | **[LECA Androsace]** | Phenotypic traits | LECA data | HMI |
FloraAlpina | Phenotypic traits of Alpine plants | © | Book | Paper version only FloraAlpina | Phenotypic traits of Alpine plants | © | Book | Paper version only
**[BOLD]** | DNA barcoding | © -> ![CC BY-NC-ND] | REST API | **[BOLD]** | DNA barcoding | © -> ![CC BY-NC-ND] | REST API | not complete genome, taxonomic markers, 2 genes: matK et rbcL
**[NCBI GenBank E-utilities]** | Taxonomy, DNA data bank | [ODbL] | REST API | **[NCBI GenBank E-utilities]** | Taxonomy, DNA data bank | [ODbL] | REST API |
**[EMBL-EBI Ensembl]** | Taxonomy, DNA data bank | Third Party | REST API, SPARQL endpoint | Clients available for Perl/Python/Java **[EMBL-EBI Ensembl]** | Taxonomy, DNA data bank | Third Party | REST API, SPARQL endpoint | Clients available for Perl/Python/Java
**[DDBJ WABI]** | Taxonomy, DNA data bank | © | REST API | Some docs in Japanese **[DDBJ WABI]** | Taxonomy, DNA data bank | © | REST API | Some docs in Japanese
...@@ -102,6 +99,7 @@ FloraAlpina | Phenotypic traits of Alpine plants | © | Book | Paper version onl ...@@ -102,6 +99,7 @@ FloraAlpina | Phenotypic traits of Alpine plants | © | Book | Paper version onl
* **[MAGE-ML]**: MicroArray Gene Expression Markup Language * **[MAGE-ML]**: MicroArray Gene Expression Markup Language
* **[KGML]**: [KEGG] Kyoto Encyclopedia of Genes and Genomes Markup Language * **[KGML]**: [KEGG] Kyoto Encyclopedia of Genes and Genomes Markup Language
* Tools * Tools
* **[Biocatalogue]**: The Life Science Web Services Registry
* **[TSE]**: Taxonomic Search Engine * **[TSE]**: Taxonomic Search Engine
* **[BioCASE]**: Biological Collection Access SErvice * **[BioCASE]**: Biological Collection Access SErvice
* **[iPhylo]**: Taxonomic id reconciliation with Google Refine * **[iPhylo]**: Taxonomic id reconciliation with Google Refine
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