data.md

@@ -2,6 +2,7 @@
 
 [Home](home) |
 [Data](data) |
+[Standards](standards |
 [Model](model) |
 [Technologies](techno) |
 [User Profiles](profiles) |
@@ -79,40 +80,6 @@ Name | Sources | NCBI | The Plant List | MNHN TaxRef | Example |Comment
 **[GBIF Species API]** | [54](http://www.gbif.org/dataset/d7dddbf4-2cf0-4f39-9b2a-bb099caae36c) | X | X |  | [link](http://api.gbif.org/v1/species/match?name=Leontopodium%20alpinum) |
 [EOL] | [50](http://eol.org/collections/97700?sort_by=3&view_as=3) |  |  |  | [link](http://eol.org/api/search/Leontopodium%20alpinum) |
 
-## Data sharing
-* Institutions
-  * **[OBO Foundry]**: Open Biomedical Ontology Foundry
-  * **[HCLSIG]**: W3C Health Care and Life Sciences Interest Group
-  * **[TDWG]**: Biodiversity Information Standards group
-  * **[BGCI]**: Botanic Gardens Conservation International
-  * **[NCEI]**: National Center for Environmental Information
-  * **[ISB]**: International Society for Biocuration
-  * **[Species 2000]**
-  * **[BioSharing]**
-* Standards & frameworks
-  * **[LSID]**: Life Science ID
-  * **[SPICE]**: Species 2000 Interoperability Co-ordination Environment
-  * **[SDD]**: Structure of Descriptive Data
-  * **[ABCD]**: Access to Biological Collections Data schema
-  * **[DwC]**: Darwin Core
-  * **[ISA]**: Investigation, Study and Assay framework
-  * **[BioDBcore]**: generic description of the core attributes of biological databases
-  * **[TCS]**: Taxonomic Concept (Transfer) Schema
-* Ontologies
-  * **[GO]**: Gene Ontology
-  * **[PO]**: Plant Ontology
-  * **[GONG]**: Gene Ontology Next Generation
-  * **[MGED]**: Micro Array Gene Expression Data
-* Gene-oriented Markup languages
-  * **[MAGE-ML]**: MicroArray Gene Expression Markup Language
-  * **[KGML]**: [KEGG] Kyoto Encyclopedia of Genes and Genomes Markup Language
-* Tools
-  * **[Biocatalogue]**: The Life Science Web Services Registry
-  * **[TSE]**: Taxonomic Search Engine
-  * **[BioCASE]**: Biological Collection Access SErvice
-  * **[iPhylo]**: Taxonomic id reconciliation with Google Refine
-  * **[MNHN TaxRef Match]**: Taxonomic id reconciliation (work in progress)
-
 ## Data quality
 * Multiple stages data validation process
   * syntactic & semantic check (automatic)
@@ -128,17 +95,17 @@ Name | Sources | NCBI | The Plant List | MNHN TaxRef | Example |Comment
 
 [SAJF]:https://www.jardinalpindulautaret.fr/accueil
 [LECA]:http://www-leca.ujf-grenoble.fr/
-[biocatalogue]:https://www.biocatalogue.org/
 [MoBot]:http://www.mobot.org/
 [MNHN]:https://www.mnhn.fr/
 [CBNA]:http://www.cbn-alpin-biblio.fr/
 [GBIF]:http://www.gbif.org/
-[LECA Androsace]:http://androsace.ujf-grenoble.fr/
 [IFB]:https://www.france-bioinformatique.fr/
 [FRB]:http://www.fondationbiodiversite.fr/fr/
-[BOLD]:http://www.boldsystems.org/
 [INSD]:https://www.ncbi.nlm.nih.gov/genbank/collab/
 [NCBI]:https://www.ncbi.nlm.nih.gov/
+
+[BOLD]:http://www.boldsystems.org/
+[LECA Androsace]:http://androsace.ujf-grenoble.fr/
 [GenBank]:https://www.ncbi.nlm.nih.gov/genbank/
 [EMBL]:http://embl.org/
 [DDBJ]:http://www.ddbj.nig.ac.jp/
@@ -150,10 +117,14 @@ Name | Sources | NCBI | The Plant List | MNHN TaxRef | Example |Comment
 [Tela Botanica eFlore]:http://www.tela-botanica.org/wikini/eflore/wakka.php?wiki=EfloreApi01
 [DDBJ WABI]:http://www.ddbj.nig.ac.jp/search/help/wabi/wabi-e.html
 [CBNA Herbarium]:http://www.gbif.org/dataset/e08f0546-0224-4b0d-886d-4ab05f0c87e6
+[MNHN TaxRef]:https://inpn.mnhn.fr/programme/referentiel-taxonomique-taxref
+[Mobot APG]:www.mobot.org/MOBOT/research/APweb/
+
 [PlantMiner]:http://www.plantminer.com
 [iPlant]:http://tnrs.iplantcollaborative.org/about.html
-[MNHN TaxRef]:https://inpn.mnhn.fr/programme/referentiel-taxonomique-taxref
+[GBIF Species API]:http://www.gbif.org/developer/species
 [OpenTreeOfLife Taxonomy]:https://github.com/OpenTreeOfLife/germinator/wiki/Taxonomy-API-v3
+[GlobalNameResolver]:http://resolver.globalnames.org/api
 [FCBN SIFlore]:http://siflore.fcbn.fr/?cd_ref=&r=metro
 [NCBI GenBank E-utilities]:https://www.ncbi.nlm.nih.gov/books/NBK25500/
 [EMBL-EBI Ensembl]:http://rest.ensembl.org/
@@ -170,34 +141,3 @@ Name | Sources | NCBI | The Plant List | MNHN TaxRef | Example |Comment
 [CC BY-NC]:https://i.creativecommons.org/l/by-nc/3.0/nl/88x31.png
 [CC BY-NC-SA]:https://i.creativecommons.org/l/by-nc-sa/3.0/nl/88x31.png
 [CC BY-NC-ND]:https://i.creativecommons.org/l/by-nc-nd/3.0/nl/88x31.png
-
-[OBO Foundry]:http://obofoundry.org/
-[hclsig]:https://www.w3.org/wiki/HCLSIG
-[TDWG]:http://www.tdwg.org/
-[BGCI]:https://www.bgci.org/
-[BioSharing]:  https://biosharing.org/
-[Species 2000]:http://www.sp2000.org/
-[ISB]:http://biocuration.org/
-[NCEI]:https://www.ncei.noaa.gov/
-[TCS]:http://tdwg.napier.ac.uk/
-[BioCASE]:http://www.biocase.org/
-[GlobalNameResolver]:http://resolver.globalnames.org/api
-[SPICE]:https://link.springer.com/chapter/10.1007/3-540-44469-6_92
-[TSE]:http://taxonomicsearch.sourceforge.net/
-[SDD]:https://github.com/tdwg/wiki-archive/blob/master/twiki/data/SDD/WebHome.txt
-[ABCD]:https://github.com/tdwg/wiki-archive/blob/master/twiki/data/ABCD/WebHome.txt
-[DwC]:http://rs.tdwg.org/dwc/
-[BioDBcore]:http://biocuration.org/community/standards-biodbcore/
-[ISA]:http://www.isacommons.org/
-[iPhylo]:https://iphylo.blogspot.fr/2012/02/using-google-refine-and-taxonomic.html
-[GO]:http://www.geneontology.org/
-[GONG]:http://gong.man.ac.uk/
-[MGED]:http://mged.sourceforge.net/ontologies/MGEDontology.php
-[PO]:http://obofoundry.org/ontology/po.html
-[mage-ml]:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC126871/
-[kgml]:http://www.genome.jp/kegg/xml/
-[KEGG]:http://www.genome.jp/kegg/
-[LSID]:https://github.com/tdwg/guid-as
-[Mobot APG]:www.mobot.org/MOBOT/research/APweb/
-[GBIF Species API]:http://www.gbif.org/developer/species
-[MNHN TaxRef Match]:https://taxref.mnhn.fr/taxref-web/accueil
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