... | @@ -46,11 +46,12 @@ |
... | @@ -46,11 +46,12 @@ |
|
* **[Phylota]**: plants browser
|
|
* **[Phylota]**: plants browser
|
|
* **FloraAlpina** (paper version only)
|
|
* **FloraAlpina** (paper version only)
|
|
* **[Tela Botanica]**: association de botanique de référence pour la botanique numérique
|
|
* **[Tela Botanica]**: association de botanique de référence pour la botanique numérique
|
|
* **[Plant list]** (cf. [Kew project]: exons sequencing)
|
|
* **[The Plant list]** (cf. [Kew project]: exons sequencing)
|
|
* **[Biocatalogue]**: The Life Science Web Services Registry
|
|
* **[Biocatalogue]**: The Life Science Web Services Registry
|
|
* **[EOL]**: Encyclopedia of Life
|
|
* **[EOL]**: Encyclopedia of Life
|
|
* **[USDA]**: United States Department of Agriculture
|
|
* **[USDA]**: United States Department of Agriculture
|
|
* **[Mobot]**: MissOuri BOTanical garden
|
|
* **[MoBot]**: MissOuri BOTanical garden
|
|
|
|
* **[MNHN]**: Musée National d'Histoire Naturelle
|
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# Data sources
|
|
# Data sources
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|
... | @@ -66,7 +67,8 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
... | @@ -66,7 +67,8 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
|
**[EMBL-EBI Ensembl]** | Taxonomy, DNA data bank | Third Party | REST API, SPARQL endpoint | Clients available for Perl/Python/Java
|
|
**[EMBL-EBI Ensembl]** | Taxonomy, DNA data bank | Third Party | REST API, SPARQL endpoint | Clients available for Perl/Python/Java
|
|
**[DDBJ WABI]** | Taxonomy, DNA data bank | © | REST API | Some docs in Japanese
|
|
**[DDBJ WABI]** | Taxonomy, DNA data bank | © | REST API | Some docs in Japanese
|
|
[iPlant TNRS] | Nomenclature, synonyms | Available | REST API | Fuzzy name matching
|
|
[iPlant TNRS] | Nomenclature, synonyms | Available | REST API | Fuzzy name matching
|
|
[Plant list] | Nomenclature, synonyms | ![CC BY-NC-ND] | HMI | > 10 data sources, 3-levels trust model
|
|
[MNHN TaxRef] | Taxonomy | Available | |
|
|
|
|
[The Plant list] | Nomenclature, synonyms | ![CC BY-NC-ND] | HMI | > 10 data sources, 3-levels trust model
|
|
**[PlantMiner]** | Nomenclature, synonyms | Available | REST API |
|
|
**[PlantMiner]** | Nomenclature, synonyms | Available | REST API |
|
|
[Tela Botanica eFlore] | Nomenclature, synonyms | ![CC BY-NC-SA] | REST API | Beta version
|
|
[Tela Botanica eFlore] | Nomenclature, synonyms | ![CC BY-NC-SA] | REST API | Beta version
|
|
[FCBN SIFlore] | Distribution map | Unavailable | HMI |
|
|
[FCBN SIFlore] | Distribution map | Unavailable | HMI |
|
... | @@ -114,8 +116,8 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
... | @@ -114,8 +116,8 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
|
* Issue tracking system
|
|
* Issue tracking system
|
|
* Bridge the gap between multiple taxonomic referentials taxonomiques:
|
|
* Bridge the gap between multiple taxonomic referentials taxonomiques:
|
|
* [NCBI]
|
|
* [NCBI]
|
|
* [Plant List]
|
|
* [The Plant List]
|
|
* [Tax Ref]
|
|
* [MNHN TaxRef]
|
|
* [Mobot APG]
|
|
* [Mobot APG]
|
|
* Version control
|
|
* Version control
|
|
|
|
|
... | @@ -126,7 +128,8 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
... | @@ -126,7 +128,8 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
|
[EMBL-EBI web services]:http://www.ebi.ac.uk/Tools/webservices/
|
|
[EMBL-EBI web services]:http://www.ebi.ac.uk/Tools/webservices/
|
|
[EMBL-EBI RDF platform Ensembl]:https://www.ebi.ac.uk/rdf/documentation/ensembl
|
|
[EMBL-EBI RDF platform Ensembl]:https://www.ebi.ac.uk/rdf/documentation/ensembl
|
|
[biocatalogue]:https://www.biocatalogue.org/
|
|
[biocatalogue]:https://www.biocatalogue.org/
|
|
[Mobot]:http://www.mobot.org/
|
|
[MoBot]:http://www.mobot.org/
|
|
|
|
[MNHN]:https://www.mnhn.fr/
|
|
[CBNA]:http://www.cbn-alpin-biblio.fr/
|
|
[CBNA]:http://www.cbn-alpin-biblio.fr/
|
|
[GBIF]:http://www.gbif.org/
|
|
[GBIF]:http://www.gbif.org/
|
|
[Androsace]:http://androsace.ujf-grenoble.fr/
|
|
[Androsace]:http://androsace.ujf-grenoble.fr/
|
... | @@ -140,7 +143,7 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
... | @@ -140,7 +143,7 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
|
[DDBJ]:http://www.ddbj.nig.ac.jp/
|
|
[DDBJ]:http://www.ddbj.nig.ac.jp/
|
|
[UniProtKB]:https://www.ebi.ac.uk/uniprot
|
|
[UniProtKB]:https://www.ebi.ac.uk/uniprot
|
|
[Phylota]:http://phylota.net/
|
|
[Phylota]:http://phylota.net/
|
|
[Plant list]:http://www.theplantlist.org/
|
|
[The Plant list]:http://www.theplantlist.org/
|
|
[Kew project]:http://www.kew.org/
|
|
[Kew project]:http://www.kew.org/
|
|
[Tela Botanica]:http://www.tela-botanica.org/
|
|
[Tela Botanica]:http://www.tela-botanica.org/
|
|
[Tela Botanica eFlore]:http://www.tela-botanica.org/wikini/eflore/wakka.php?wiki=EfloreApi01
|
|
[Tela Botanica eFlore]:http://www.tela-botanica.org/wikini/eflore/wakka.php?wiki=EfloreApi01
|
... | @@ -148,6 +151,7 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
... | @@ -148,6 +151,7 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
|
[CBNA Herbarium]:http://www.gbif.org/dataset/e08f0546-0224-4b0d-886d-4ab05f0c87e6
|
|
[CBNA Herbarium]:http://www.gbif.org/dataset/e08f0546-0224-4b0d-886d-4ab05f0c87e6
|
|
[PlantMiner]:http://www.plantminer.com
|
|
[PlantMiner]:http://www.plantminer.com
|
|
[iPlant TNRS]:http://tnrs.iplantcollaborative.org/about.html
|
|
[iPlant TNRS]:http://tnrs.iplantcollaborative.org/about.html
|
|
|
|
[MNHN TaxRef]:https://inpn.mnhn.fr/programme/referentiel-taxonomique-taxref
|
|
[FCBN SIFlore]:http://siflore.fcbn.fr/?cd_ref=&r=metro
|
|
[FCBN SIFlore]:http://siflore.fcbn.fr/?cd_ref=&r=metro
|
|
[NCBI GenBank E-utilities]:https://www.ncbi.nlm.nih.gov/books/NBK25500/
|
|
[NCBI GenBank E-utilities]:https://www.ncbi.nlm.nih.gov/books/NBK25500/
|
|
[EMBL-EBI Ensembl]:http://rest.ensembl.org/
|
|
[EMBL-EBI Ensembl]:http://rest.ensembl.org/
|
... | @@ -191,5 +195,4 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
... | @@ -191,5 +195,4 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
|
[kgml]:http://www.genome.jp/kegg/xml/
|
|
[kgml]:http://www.genome.jp/kegg/xml/
|
|
[KEGG]:http://www.genome.jp/kegg/
|
|
[KEGG]:http://www.genome.jp/kegg/
|
|
[LSID]:https://github.com/tdwg/guid-as
|
|
[LSID]:https://github.com/tdwg/guid-as
|
|
[Tax Ref]:https://inpn.mnhn.fr/programme/referentiel-taxonomique-taxref
|
|
|
|
[Mobot APG]:www.mobot.org/MOBOT/research/APweb/ |
|
[Mobot APG]:www.mobot.org/MOBOT/research/APweb/ |
|
\ No newline at end of file |
|
|