... | ... | @@ -46,11 +46,12 @@ |
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* **[Phylota]**: plants browser
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* **FloraAlpina** (paper version only)
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* **[Tela Botanica]**: association de botanique de référence pour la botanique numérique
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* **[Plant list]** (cf. [Kew project]: exons sequencing)
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* **[The Plant list]** (cf. [Kew project]: exons sequencing)
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* **[Biocatalogue]**: The Life Science Web Services Registry
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* **[EOL]**: Encyclopedia of Life
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* **[USDA]**: United States Department of Agriculture
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* **[Mobot]**: MissOuri BOTanical garden
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* **[MoBot]**: MissOuri BOTanical garden
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* **[MNHN]**: Musée National d'Histoire Naturelle
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# Data sources
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... | ... | @@ -66,7 +67,8 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
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**[EMBL-EBI Ensembl]** | Taxonomy, DNA data bank | Third Party | REST API, SPARQL endpoint | Clients available for Perl/Python/Java
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**[DDBJ WABI]** | Taxonomy, DNA data bank | © | REST API | Some docs in Japanese
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[iPlant TNRS] | Nomenclature, synonyms | Available | REST API | Fuzzy name matching
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[Plant list] | Nomenclature, synonyms | ![CC BY-NC-ND] | HMI | > 10 data sources, 3-levels trust model
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[MNHN TaxRef] | Taxonomy | Available | |
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[The Plant list] | Nomenclature, synonyms | ![CC BY-NC-ND] | HMI | > 10 data sources, 3-levels trust model
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**[PlantMiner]** | Nomenclature, synonyms | Available | REST API |
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[Tela Botanica eFlore] | Nomenclature, synonyms | ![CC BY-NC-SA] | REST API | Beta version
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[FCBN SIFlore] | Distribution map | Unavailable | HMI |
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... | ... | @@ -114,8 +116,8 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
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* Issue tracking system
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* Bridge the gap between multiple taxonomic referentials taxonomiques:
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* [NCBI]
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* [Plant List]
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* [Tax Ref]
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* [The Plant List]
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* [MNHN TaxRef]
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* [Mobot APG]
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* Version control
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... | ... | @@ -126,7 +128,8 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
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[EMBL-EBI web services]:http://www.ebi.ac.uk/Tools/webservices/
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[EMBL-EBI RDF platform Ensembl]:https://www.ebi.ac.uk/rdf/documentation/ensembl
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[biocatalogue]:https://www.biocatalogue.org/
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[Mobot]:http://www.mobot.org/
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[MoBot]:http://www.mobot.org/
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[MNHN]:https://www.mnhn.fr/
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[CBNA]:http://www.cbn-alpin-biblio.fr/
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[GBIF]:http://www.gbif.org/
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[Androsace]:http://androsace.ujf-grenoble.fr/
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... | ... | @@ -140,7 +143,7 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
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[DDBJ]:http://www.ddbj.nig.ac.jp/
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[UniProtKB]:https://www.ebi.ac.uk/uniprot
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[Phylota]:http://phylota.net/
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[Plant list]:http://www.theplantlist.org/
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[The Plant list]:http://www.theplantlist.org/
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[Kew project]:http://www.kew.org/
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[Tela Botanica]:http://www.tela-botanica.org/
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[Tela Botanica eFlore]:http://www.tela-botanica.org/wikini/eflore/wakka.php?wiki=EfloreApi01
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... | ... | @@ -148,6 +151,7 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
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[CBNA Herbarium]:http://www.gbif.org/dataset/e08f0546-0224-4b0d-886d-4ab05f0c87e6
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[PlantMiner]:http://www.plantminer.com
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[iPlant TNRS]:http://tnrs.iplantcollaborative.org/about.html
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[MNHN TaxRef]:https://inpn.mnhn.fr/programme/referentiel-taxonomique-taxref
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[FCBN SIFlore]:http://siflore.fcbn.fr/?cd_ref=&r=metro
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[NCBI GenBank E-utilities]:https://www.ncbi.nlm.nih.gov/books/NBK25500/
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[EMBL-EBI Ensembl]:http://rest.ensembl.org/
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... | ... | @@ -191,5 +195,4 @@ FloraAlpina | Phenotypic traits | © | Book | Paper version only |
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[kgml]:http://www.genome.jp/kegg/xml/
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[KEGG]:http://www.genome.jp/kegg/
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[LSID]:https://github.com/tdwg/guid-as
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[Tax Ref]:https://inpn.mnhn.fr/programme/referentiel-taxonomique-taxref
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[Mobot APG]:www.mobot.org/MOBOT/research/APweb/ |
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\ No newline at end of file |