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.DS_Store banished!Fix the menu links authored by Anthony Hombiat's avatar Anthony Hombiat
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data.md
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* Mapping of relational data to [RDF] ([W3C R2RML specification]) * Mapping of relational data to [RDF] ([W3C R2RML specification])
## Data Providers ## Data Providers
* NCBI's *[Entrez Programming Utilities]* (E-utilities) * **Herbier PhyloAlps** (en cours de réalisation), QR code (référence espèce et séquence)
Nota: * **Herbier du [CBNA]** : conservatoire Botanique Nationaux (CBN Alpin à Briançon et CBN Méditerranéen)
> NCBI places no restrictions on the use or distribution of the GenBank data. However, some submitters may claim patent, copyright, or other intellectual property rights in all or a portion of the data they have submitted. * **[GBIF]** : Global Biodiversity Information Facility (occurrences, observations, /!\ couverture)
* EMBL-EBI * **[Androsace]** : traits biologiques de référence pour les plantes Alpines (voir avec Julien pour la disponibilité des données)
* [Web Services] * **[IFB]** : Institut Français pour la Bioinformatique
* RDF platform [Ensembl] * **[FRB]** : Fondation pour la Recherche en Biodiversité
* **[BOLD]** : pas le génome complet (marqueurs taxonomiques, 2 gènes matK et rbcL)
* **[INSD]** : International Nucleotide Sequence Database Collaboration :
* **NCBI [GenBank]** : National Center for Biotechnology Information
* [Entrez Programming Utilities]* (E-utilities)
* **[EMBL]** : European Molecular Biology Laboratory
* [EMBL-EBI Web Services]
* [EMBL-EBI RDF platform Ensembl]
* **[DDBJ]** : DNA DB of Japan European Molecular Biology Lab
* **[UniProtKB]** (Swiss-Prot) utilise [EMBL]
* **[Phylota]** : browser pour les plantes
* **FloraAlpina** (version électronique ?)
* **[Tela Botanica]** : association de botanique de référence pour la botanique numérique
* **[Plant list]** (cf. [Kew project] : séquençage d'exons)
* [Biocatalogue] * [Biocatalogue]
## Gene Ontologies ## Gene Ontologies
...@@ -38,8 +51,8 @@ Nota: ...@@ -38,8 +51,8 @@ Nota:
[rdf]:https://www.w3.org/RDF/ [rdf]:https://www.w3.org/RDF/
[w3c r2rml specification]:https://www.w3.org/TR/r2rml/ [w3c r2rml specification]:https://www.w3.org/TR/r2rml/
[entrez programming utilities]:https://www.ncbi.nlm.nih.gov/books/NBK25501/ [entrez programming utilities]:https://www.ncbi.nlm.nih.gov/books/NBK25501/
[web services]:http://www.ebi.ac.uk/Tools/webservices/ [EMBL-EBI web services]:http://www.ebi.ac.uk/Tools/webservices/
[Ensembl]:https://www.ebi.ac.uk/rdf/documentation/ensembl [EMBL-EBI RDF platform Ensembl]:https://www.ebi.ac.uk/rdf/documentation/ensembl
[biocatalogue]:https://www.biocatalogue.org/ [biocatalogue]:https://www.biocatalogue.org/
[hclsig]:https://www.w3.org/wiki/HCLSIG [hclsig]:https://www.w3.org/wiki/HCLSIG
[GO]:http://www.geneontology.org/ [GO]:http://www.geneontology.org/
...@@ -47,3 +60,18 @@ Nota: ...@@ -47,3 +60,18 @@ Nota:
[MGED]:http://mged.sourceforge.net/ontologies/MGEDontology.php [MGED]:http://mged.sourceforge.net/ontologies/MGEDontology.php
[mage-ml]:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC126871/ [mage-ml]:https://www.ncbi.nlm.nih.gov/pmc/articles/PMC126871/
[kgml]:http://www.genome.jp/kegg/xml/ [kgml]:http://www.genome.jp/kegg/xml/
[CBNA]:http://www.cbn-alpin-biblio.fr/
[GBIF]:http://www.gbif.org/
[Androsace]:http://androsace.ujf-grenoble.fr/
[IFB]:https://www.france-bioinformatique.fr/
[FRB]:http://www.fondationbiodiversite.fr/fr/
[BOLD]:http://www.boldsystems.org/
[INSD]:https://www.ncbi.nlm.nih.gov/genbank/collab/
[GenBank]:https://www.ncbi.nlm.nih.gov/genbank/
[EMBL]:http://embl.org/
[DDBJ]:http://www.ddbj.nig.ac.jp/
[UniProtKB]:https://www.ebi.ac.uk/uniprot
[Phylota]:http://phylota.net/
[Plant list]:http://www.theplantlist.org/
[Kew project]:http://www.kew.org/
[Tela Botanica]:http://www.tela-botanica.org/
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