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*[Download the bibliography in .bibtex format](phyloalps.bib)* *[Download the bibliography in .bibtex format](phyloalps.bib)*
* Hasnain, A., Mehmood, Q., Sana e Zainab, S., Saleem, M., Warren, C., Zehra, D., … Rebholz-Schuhmann, D. (2017). BioFed: federated query processing over life sciences linked open data. Journal of Biomedical Semantics, 8(1), 13. https://doi.org/10.1186/s13326-017-0118-0 * Hasnain, A., Mehmood, Q., Sana e Zainab, S., Saleem, M., Warren, C., Zehra, D., … Rebholz-Schuhmann, D. (2017). BioFed: federated query processing over life sciences linked open data. *Journal of Biomedical Semantics*, 8(1), 13. https://doi.org/10.1186/s13326-017-0118-0
* Coissac, E., Hollingsworth, P. M., Lavergne, S., & Taberlet, P. (2016). From barcodes to genomes: extending the concept of DNA barcoding. Molecular Ecology, 25(7), 1423–1428. https://doi.org/10.1111/mec.13549 * Coissac, E., Hollingsworth, P. M., Lavergne, S., & Taberlet, P. (2016). From barcodes to genomes: extending the concept of DNA barcoding. *Molecular Ecology*, 25(7), 1423–1428. https://doi.org/10.1111/mec.13549
* Bandrowski, A., Brinkman, R., Brochhausen, M., Brush, M. H., Bug, B., Chibucos, M. C., … Zheng, J. (2016). The Ontology for Biomedical Investigations. PloS One, 11(4), e0154556. https://doi.org/10.1371/journal.pone.0154556 * Bandrowski, A., Brinkman, R., Brochhausen, M., Brush, M. H., Bug, B., Chibucos, M. C., … Zheng, J. (2016). The Ontology for Biomedical Investigations. *PloS One*, 11(4), e0154556. https://doi.org/10.1371/journal.pone.0154556
* ITIS. (2015). ITIS Data Model. Retrieved from https://www.itis.gov/pdf/ITIS_ConceptualModelEntityDefinition.pdf * ITIS. (2015). *ITIS Data Model*. Retrieved from https://www.itis.gov/pdf/ITIS_ConceptualModelEntityDefinition.pdf
* Hinchliff, C. E., Smith, S. A., Allman, J. F., Burleigh, J. G., Chaudhary, R., Coghill, L. M., … Cranston, K. A. (2015). Synthesis of phylogeny and taxonomy into a comprehensive tree of life. Proceedings of the National Academy of Sciences, 112(41), 12764–12769. https://doi.org/10.1073/pnas.1423041112 * Hinchliff, C. E., Smith, S. A., Allman, J. F., Burleigh, J. G., Chaudhary, R., Coghill, L. M., … Cranston, K. A. (2015). Synthesis of phylogeny and taxonomy into a comprehensive tree of life. *Proceedings of the National Academy of Sciences*, 112(41), 12764–12769. https://doi.org/10.1073/pnas.1423041112
* Robertson, T., Döring, M., Guralnick, R., Bloom, D., Wieczorek, J., Braak, K., … Desmet, P. (2014). The GBIF Integrated Publishing Toolkit: Facilitating the Efficient Publishing of Biodiversity Data on the Internet. PLoS ONE, 9(8), e102623. https://doi.org/10.1371/journal.pone.0102623 * Robertson, T., Döring, M., Guralnick, R., Bloom, D., Wieczorek, J., Braak, K., … Desmet, P. (2014). The GBIF Integrated Publishing Toolkit: Facilitating the Efficient Publishing of Biodiversity Data on the Internet. *PLoS ONE*, 9(8), e102623. https://doi.org/10.1371/journal.pone.0102623
* TDWG. (2013). Report of the TDWG Vocabulary Management Task Group (VoMaG). https://doi.org/10.13140/RG.2.1.1503.7920 * TDWG. (2013). *Report of the TDWG Vocabulary Management Task Group (VoMaG)*. https://doi.org/10.13140/RG.2.1.1503.7920
* Anguita, A., García-Remesal, M., de la Iglesia, D., & Maojo, V. (2013). NCBI2RDF: Enabling Full RDF-Based Access to NCBI Databases. BioMed Research International, 2013, 1–9. https://doi.org/10.1155/2013/983805 * Anguita, A., García-Remesal, M., de la Iglesia, D., & Maojo, V. (2013). NCBI2RDF: Enabling Full RDF-Based Access to NCBI Databases. *BioMed Research International*, 2013, 1–9. https://doi.org/10.1155/2013/983805
* Wieczorek, J., Bloom, D., Guralnick, R., Blum, S., D?ring, M., Giovanni, R., … Vieglais, D. (2012). Darwin Core: An Evolving Community-Developed Biodiversity Data Standard. PLoS ONE, 7(1), e29715. https://doi.org/10.1371/journal.pone.0029715 * Wieczorek, J., Bloom, D., Guralnick, R., Blum, S., D?ring, M., Giovanni, R., … Vieglais, D. (2012). Darwin Core: An Evolving Community-Developed Biodiversity Data Standard. *PLoS ONE*, 7(1), e29715. https://doi.org/10.1371/journal.pone.0029715
* Sansone, S.-A., Rocca-Serra, P., Field, D., Maguire, E., Taylor, C., Hofmann, O., … Hide, W. (2012). Toward interoperable bioscience data. Nature Genetics, 44(2), 121–126. https://doi.org/10.1038/ng.1054 * Sansone, S.-A., Rocca-Serra, P., Field, D., Maguire, E., Taylor, C., Hofmann, O., … Hide, W. (2012). Toward interoperable bioscience data. *Nature Genetics*, 44(2), 121–126. https://doi.org/10.1038/ng.1054
* Gaudet, P., Bairoch, A., Field, D., Sansone, S.-A., Taylor, C., Attwood, T. K., … Yamasaki, C. (2011). Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Research, 39(Database), D7–D10. https://doi.org/10.1093/nar/gkq1173 * Gaudet, P., Bairoch, A., Field, D., Sansone, S.-A., Taylor, C., Attwood, T. K., … Yamasaki, C. (2011). Towards BioDBcore: a community-defined information specification for biological databases. Nucleic Acids Research, 39(*Database*), D7–D10. https://doi.org/10.1093/nar/gkq1173
* Goff, S. A., Vaughn, M., McKay, S., Lyons, E., Stapleton, A. E., Gessler, D., … Stanzione, D. (2011). The iPlant Collaborative: Cyberinfrastructure for Plant Biology. Frontiers in Plant Science, 2. https://doi.org/10.3389/fpls.2011.00034 * Goff, S. A., Vaughn, M., McKay, S., Lyons, E., Stapleton, A. E., Gessler, D., … Stanzione, D. (2011). The iPlant Collaborative: Cyberinfrastructure for Plant Biology. *Frontiers in Plant Science*, 2. https://doi.org/10.3389/fpls.2011.00034
* Constable, H., Guralnick, R., Wieczorek, J., Spencer, C., & Peterson, A. T. (2010). VertNet: A New Model for Biodiversity Data Sharing. PLoS Biology, 8(2), e1000309. https://doi.org/10.1371/journal.pbio.1000309 * Constable, H., Guralnick, R., Wieczorek, J., Spencer, C., & Peterson, A. T. (2010). VertNet: A New Model for Biodiversity Data Sharing. *PLoS Biology*, 8(2), e1000309. https://doi.org/10.1371/journal.pbio.1000309
* TDWG. (2010). TDWG GUID Applicability Statement. Retrieved from https://github.com/tdwg/guid-as/blob/master/guid/applicability_statement.doc * TDWG. (2010). *TDWG GUID Applicability Statement*. Retrieved from https://github.com/tdwg/guid-as/blob/master/guid/applicability_statement.doc
* TDWG. (2009). TDWG Life Sciences Identifiers (LSID) Applicability Statement. Retrieved from https://github.com/tdwg/guid-as/blob/master/lsid/applicability_statement.doc * TDWG. (2009). *TDWG Life Sciences Identifiers (LSID) Applicability Statement*. Retrieved from https://github.com/tdwg/guid-as/blob/master/lsid/applicability_statement.doc
* Page, R. D. (2008). LSID Tester, a tool for testing Life Science Identifier resolution services. Source Code for Biology and Medicine, 3(1), 2. https://doi.org/10.1186/1751-0473-3-2 * Page, R. D. (2008). LSID Tester, a tool for testing Life Science Identifier resolution services. *Source Code for Biology and Medicine*, 3(1), 2. https://doi.org/10.1186/1751-0473-3-2
* Karp, D. R., Carlin, S., Cook-Deegan, R., Ford, D. E., Geller, G., Glass, D. N., … Sugarman, J. (2008). Ethical and Practical Issues Associated with Aggregating Databases. PLoS Medicine, 5(9), e190. https://doi.org/10.1371/journal.pmed.0050190 * Karp, D. R., Carlin, S., Cook-Deegan, R., Ford, D. E., Geller, G., Glass, D. N., … Sugarman, J. (2008). Ethical and Practical Issues Associated with Aggregating Databases. *PLoS Medicine*, 5(9), e190. https://doi.org/10.1371/journal.pmed.0050190
* Ratnasingham, S., & Hebert, P. D. N. (2007). BARCODING: bold: The Barcode of Life Data System. Molecular Ecology Notes, 7(3), 355–364. https://doi.org/10.1111/j.1471-8286.2007.01678.x * Ratnasingham, S., & Hebert, P. D. N. (2007). BARCODING: bold: The Barcode of Life Data System. *Molecular Ecology Notes*, 7(3), 355–364. https://doi.org/10.1111/j.1471-8286.2007.01678.x
* Kennedy, J., Hyam, R., Kukla, R., & Paterson, T. (2006). Standard Data Model Representation for Taxonomic Information. OMICS: A Journal of Integrative Biology, 10(2), 220–230. https://doi.org/10.1089/omi.2006.10.220 * Kennedy, J., Hyam, R., Kukla, R., & Paterson, T. (2006). Standard Data Model Representation for Taxonomic Information. *OMICS: A Journal of Integrative Biology*, 10(2), 220–230. https://doi.org/10.1089/omi.2006.10.220
* Page, R. D. (2005). A Taxonomic Search Engine: Federating taxonomic databases using web services. BMC Bioinformatics, 6(1), 48. https://doi.org/10.1186/1471-2105-6-48 * Page, R. D. (2005). A Taxonomic Search Engine: Federating taxonomic databases using web services. *BMC Bioinformatics*, 6(1), 48. https://doi.org/10.1186/1471-2105-6-48
* OMG. (2004). Life Science Identifiers Specifications. * OMG. (2004). *Life Science Identifiers Specifications*. Retrieved from http://www.omg.org/cgi-bin/doc?dtc/04-05-01.pdf
* TDWG. (2004). Taxonomic Concept Schema. Retrieved from http://tdwg.napier.ac.uk/doc/tdwg_tcs.pdf * TDWG. (2004). *Taxonomic Concept Schema*. Retrieved from http://tdwg.napier.ac.uk/doc/tdwg_tcs.pdf
* National Human Genome Research Institute. (2002). Report from the NIH/NIAID/Wellcome Trust Workshop on Model Organism Databases. Retrieved from https://www.genome.gov/10006356/mod-workshop-report/ * National Human Genome Research Institute. (2002). *Report from the NIH/NIAID/Wellcome Trust Workshop on Model Organism Databases*. Retrieved from https://www.genome.gov/10006356/mod-workshop-report/
* Jones, A. C., Xu, X., Pittas, N., Gray, W. A., Fiddian, N. J., White, R. J., … Brandt, S. M. (2000). SPICE: A Flexible Architecture for Integrating Autonomous Databases to Comprise a Distributed Catalogue of Life. In M. Ibrahim, J. Küng, & N. Revell (Eds.), Database and Expert Systems Applications: 11th International Conference, DEXA 2000 London, UK, September 4--8, 2000 Proceedings (pp. 981–992). Berlin, Heidelberg: Springer Berlin Heidelberg. https://doi.org/10.1007/3-540-44469-6_92 * Jones, A. C., Xu, X., Pittas, N., Gray, W. A., Fiddian, N. J., White, R. J., … Brandt, S. M. (2000). SPICE: A Flexible Architecture for Integrating Autonomous Databases to Comprise a Distributed Catalogue of Life. In M. Ibrahim, J. Küng, & N. Revell (Eds.), *Database and Expert Systems Applications: 11th International Conference*, DEXA 2000 London, UK, September 4--8, 2000 Proceedings (pp. 981–992). Berlin, Heidelberg: Springer Berlin Heidelberg. https://doi.org/10.1007/3-540-44469-6_92