Commits · 9a267727234dc9026ce3a54f543e62d8f609945a · ORG.Asm / ORG.Annotate

11 Nov, 2015 3 commits
- summary added in comparison · 9a267727
  alain viari authored 9 years ago
  
  9a267727
- data sources for chlorodb added · 0eb38db3
  alain viari authored 9 years ago
  
  0eb38db3
- data sources for chlorodb added · 4cb93ee2
  alain viari authored 9 years ago
  
  4cb93ee2
10 Nov, 2015 3 commits
- Merge branch 'master' of git.metabarcoding.org:org-asm/org-annotate · 14936719
  alain viari authored 9 years ago
  
  14936719
- fixed too many partial CDS bug · d733a46f
  alain viari authored 9 years ago
  
  d733a46f
- added cds/tools compare and chrlorodb · 31633e6b
  alain viari authored 9 years ago
  
  31633e6b
09 Nov, 2015 9 commits
- Change minimum length for considering a match from 1000 to 100. · 6bd827ca
  Eric Coissac authored 9 years ago
  
  6bd827ca
- remove the debug code · 7a805dc6
  Eric Coissac authored 9 years ago
  
  7a805dc6
- Patch bug in the inverted repeats annotation · 73e4e016
  Eric Coissac authored 9 years ago
```
Realize the annotation on the normalized chromosome
```
  73e4e016
- Run the annotation on the normalized sequence · 48e30ca5
  Eric Coissac authored 9 years ago
  
  48e30ca5
- small modifications for the luke cluster · 55a83611
  Eric Coissac authored 9 years ago
  
  55a83611
- change the call to awk · fa0b02e7
  Eric Coissac authored 9 years ago
  
  fa0b02e7
- Patches for the cluster luke · 54cfd925
  Eric Coissac authored 9 years ago
  
  54cfd925
- Patch config/default.conf for considering a CFLAGS and LDFLAGS locally predefined variables · 29597cc2
  Eric Coissac eric.coissac@ujf-grenoble.fr authored 9 years ago
  
  29597cc2
- added cds/tools/compare · 07fb256b
  alain viari authored 9 years ago
  
  07fb256b
08 Nov, 2015 11 commits
- go_pass1 moved to bin · 6be837df
  alain viari authored 9 years ago
  
  6be837df
- fixed bug : CDS product not quoted · 412798e7
  alain viari authored 9 years ago
  
  412798e7
- Merge branch 'master' of git.metabarcoding.org:org-asm/org-annotate · 0a81301c
  alain viari authored 9 years ago
  
  0a81301c
- corrected Annotation reordering for CDS · c59ad42e
  alain viari authored 9 years ago
  
  c59ad42e
- Switch from awk to gawk · 70b104ab
  Eric Coissac authored 9 years ago
  
  70b104ab
- Merge branch 'master' of git.metabarcoding.org:org-asm/org-annotate · 30df24d0
  alain viari authored 9 years ago
  
  30df24d0
- default PASS1_SPEEDUP set to 0 · 38d036b8
  alain viari authored 9 years ago
  
  38d036b8
- Add gawk dans les binaries which not standard on mac at least · fcdf44b5
  Eric Coissac authored 9 years ago
  
  fcdf44b5
- remove dev_config · fa67c98a
  alain viari authored 9 years ago
  
  fa67c98a
- CDS detector added · a72f30f9
  alain viari authored 9 years ago
  
  a72f30f9
- CDS detector added · 93fac7a7
  alain viari authored 9 years ago
  
  93fac7a7
06 Nov, 2015 1 commit
- test alain · cf7169a7
  alain viari authored 9 years ago
  
  cf7169a7
12 Oct, 2015 2 commits
- enforce the annotation of full-length rrna genes only · 0669e643
  Eric Coissac authored 9 years ago
  
  0669e643
- First version including the rRNA detector · 865e2626
  Eric Coissac authored 9 years ago
  
  865e2626
11 Oct, 2015 2 commits
- Add the reformating of the sequence in EMBL format · f58f9d67
  Eric Coissac authored 9 years ago
  
  f58f9d67
- First version of the tRNA detector and of the global organnot.sh script · f2a75cf9
  Eric Coissac authored 9 years ago
  
  f2a75cf9
10 Oct, 2015 1 commit
- First version of the scripts for building the CAU tRNA database · 443a0446
  Eric Coissac authored 9 years ago
  
  443a0446
08 Oct, 2015 3 commits
- First version of if inverted repeat annotation tools · 9d13deae
  Eric Coissac authored 9 years ago
  
  9d13deae
- rename the main normalization script in go_normalize.sh · e9488f88
  Eric Coissac authored 9 years ago
  
  e9488f88
- A first functionnal version of the normalize_plastid.sh script. · 78c4a4d8
  Eric Coissac authored 9 years ago
  
  78c4a4d8
07 Oct, 2015 3 commits
- Patch building of the Single copy reference DB to make a single blast · 9bad3443
  Eric Coissac authored 9 years ago
```
database for Large and Small Single copy
```
  9bad3443
- Add reference databases for LSC and SSC · 0feda4b7
  Eric Coissac authored 9 years ago
  
  0feda4b7
- Add scripts to generate reference DBs for LSC and SSC · 77fd69c9
  Eric Coissac authored 9 years ago
  
  77fd69c9
06 Oct, 2015 2 commits
- Add a forgeted Makefile · f633e09b
  Eric Coissac authored 9 years ago
  
  f633e09b
- add gitignore files · 955ee956
  Eric Coissac authored 9 years ago
  
  955ee956