O

ORG.Annotate

A pipeline for annotating Chloroplast genomes

#
# ------------------------------------------
# ORG.Annot - Organelle Annotator
# version 1.0.0 - Sept 2015
# ------------------------------------------
#
# -------------------------
# -1- Installation
# -------------------------
#
# First check if binaries have been already compiled for your port
#
# $ scripts/check_port.sh
#
# if it prints :
#
# + checking port compilation OK
#
# then everything is fine
#
# if it prints :
#
# + port not yet compiled
#
# then, you should first compile binaries for your port
# please consult: src/README.txt for details
#
# if it prints smthing like
# * XXX version A.B.C (should be >= X.Y.Z)
# * please consider installing XXX from src/_unix_tools_
# 
# then, you should first compile some unix tools binaries for your port
# please consult: src/README.txt for details
#
# -------------------------
# -2- Distribution organisation
# -------------------------
#
# config    :  config file for (re)compiling tools
# data      :  internal data files (e.g. ChloroDB)
# detectors :  features specific detector scripts
# ports     :  binaries for various ports
# scripts   :  main scripts directory
# src       :  sources for (re)compiling tools
#
# -------------------------
# -3- Usage
# -------------------------
#
# note: all scripts are located in scripts, so you may add
#       this directory in your path
#       e.g. using csh 
#       set path = ($path <ROOTDIR>/scripts)
#
# @TODO : scripts description
#
# test