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Closed
Open
Opened May 12, 2022 by Clément Lionnet@lionnetc

error gobiuniq "slice bounds out of range"

gobiuniq --debug -w 2 --input-OBI-header --output-OBI-header -m sample next_orchamp_fung02_all.fasta > test.fasta DEBU[0000] Switch to debug level logging
INFO[0000] Appending next_orchamp_fung02_all.fasta file DEBU[0000] File guessed format : %s (tag: %s)fasta>M06662:290:000000000-K88P8:1: DEBU[0000] File size of next_orchamp_fung02_all.fasta is 88602491 bytes DEBU[0000] Start of the fastq file reading
DEBU[0000] Start of the batch workers
INFO[0000] Running dereplication in memory on 100 chunks INFO[0000] Keep sigletons in the output
INFO[0000] Starting data splitting
INFO[0000] End of the data splitting
INFO[0000] On output use OBI headers
panic: runtime error: slice bounds out of range [218:217]

goroutine 25 [running]: git.metabarcoding.org/lecasofts/go/obitools/pkg/obiformats.ParseOBIFeatures({0xc00007a000, 0x0}, 0xc000041720) /home/lionnetc/travail/dev/project/obitools-go/obitools/pkg/obiformats/fastseq_obi_header.go:256 +0x987 git.metabarcoding.org/lecasofts/go/obitools/pkg/obiformats.ParseFastSeqOBIHeader(0xc00007c000) /home/lionnetc/travail/dev/project/obitools-go/obitools/pkg/obiformats/fastseq_obi_header.go:267 +0x69 git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter.AnnotatorToSeqWorker.func1(0x0) /home/lionnetc/travail/dev/project/obitools-go/obitools/pkg/obiiter/workers.go:16 +0x22 git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter.IBioSequenceBatch.MakeIWorker.func2({0x0}) /home/lionnetc/travail/dev/project/obitools-go/obitools/pkg/obiiter/workers.go:50 +0x202 created by git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter.IBioSequenceBatch.MakeIWorker /home/lionnetc/travail/dev/project/obitools-go/obitools/pkg/obiiter/workers.go:59 +0x2ff

next_orchamp_fung02_all.fasta.bz2

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Reference: obitools/obitools4/obitools4#4