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Closed
Open
Opened May 12, 2022 by Clément Lionnet@lionnetc

Erreur gobiuniq

gobiuniq --debug -w 2 --input-OBI-header --output-OBI-header -m sample next_orchamp_fung02_all.fasta DEBU[0000] Switch to debug level logging
INFO[0000] Appending next_orchamp_fung02_all.fasta file DEBU[0000] File guessed format : %s (tag: %s)fasta>M06662:290:000000000-K88P8:1: DEBU[0000] File size of next_orchamp_fung02_all.fasta is 88202181 bytes DEBU[0000] Start of the fastq file reading
DEBU[0000] Start of the batch workers
INFO[0000] Running dereplication in memory on 100 chunks INFO[0000] Keep sigletons in the output
INFO[0000] Starting data splitting
INFO[0000] End of the data splitting
INFO[0000] On output use OBI headers
/ Splitting data set (75000/-, 64085 it/s) DEBU[0000] End of the fastq file reading
/ Splitting data set (80062/-, 64085 it/s) DEBU[0000] End of the batch workers
DEBU[0000] Allocate a new ordered sequences : 826
DEBU[0000] Allocate a new ordered sequences : 812
panic: runtime error: comparing uncomparable type map[string]interface {}

goroutine 51 [running]: git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq.(*BioSequence).Merge(0xc000512601, 0xc003125960, {0x664f50, 0x2}, 0xa8, {0xc0002e2e00, 0x1, 0xc0005126f0}) /home/lionnetc/travail/dev/project/obitools-go/obitools/pkg/obiseq/merge.go:128 +0x405 git.metabarcoding.org/lecasofts/go/obitools/pkg/obiseq.BioSequenceSlice.Merge({0xc00431e1e0, 0x2, 0xa}, {0x664f50, 0x2}, {0xc0002e2e00, 0x1, 0x64}) /home/lionnetc/travail/dev/project/obitools-go/obitools/pkg/obiseq/merge.go:158 +0x1d4 git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter.IBioSequenceBatch.IMergeSequenceBatch.func2() /home/lionnetc/travail/dev/project/obitools-go/obitools/pkg/obiiter/merge.go:31 +0x3e6 created by git.metabarcoding.org/lecasofts/go/obitools/pkg/obiiter.IBioSequenceBatch.IMergeSequenceBatch /home/lionnetc/travail/dev/project/obitools-go/obitools/pkg/obiiter/merge.go:24 +0x331

next_orchamp_fung02_all.fasta.bz2

Edited May 12, 2022 by Clément Lionnet
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Reference: obitools/obitools4/obitools4#3