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OBITools3
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Opened by Eric Coissac@coissacOwner

Problem of quoting quotes when reporting obi commands including quotes in the history

When you run a command like that one that includes quotes and double quotes

obi grep -p "len(sequence)>=80 and sequence['COUNT']>=10" \
          wolf/cleaned_metadata_sequences \
          wolf/denoised_sequences

The history is reporting it like that :

obi grep -p len(sequence)>=80 and sequence['COUNT']>=10 wolf/cleaned_metadata_sequences wolf/denoised_sequences

The previous command is not following a correct Unix syntax because the double quotes have been lost.

It induces also error in the generated dot file if you use the -d option of the obi history command.

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