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  • #86

Closed
Open
Opened Jan 22, 2021 by Mitica Ciorpac@ciorpac.mitica

import Error

Hi, I just installed OBItools3, I tried to import the taxonomic data base (NCBI) and I got the following error:

>obi import --taxdump TAXO/taxdump.tar.gz Recover/my_tax 2021-01-22 09:44:54,265 [import : INFO ] obi import: imports an object (file(s), obiview, taxonomy...) into a DMS Traceback (most recent call last): File "/usr/local/bin/obi", line 4, in <module> __import__('pkg_resources').run_script('OBITools3==3.0.0b39', 'obi') File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 667, in run_script self.require(requires)[0].run_script(script_name, ns) File "/usr/lib/python3/dist-packages/pkg_resources/__init__.py", line 1463, in run_script exec(code, namespace, namespace) File "/usr/local/lib/python3.8/dist-packages/OBITools3-3.0.0b39-py3.8-linux-x86_64.egg/EGG-INFO/scripts/obi", line 62, in <module> config[root_config_name]['module'].run(config) File "python/obitools3/commands/import.pyx", line 172, in obitools3.commands.import.run IndexError: list index out of range

I previously used OBItools the old version and worked fine, can you help me with the above error? Thanks.

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Reference: obitools/obitools3#86