ecotag fails with DMS does not exist
Hi Céline,
I built a ref DB with obi build_ref_db
obi build_ref_db -t 0.97 --taxonomy /Volumes/Elements/EMBL_dms/taxonomy/my_tax /Volumes/Elements/EMBL_dms/COI_BF3_BR2_clean /Volumes/Elements/EMBL_dms/COI_BF3_BR2_097
and imported my sequences in a different View
obi import ~/Documents/01_Work/01_Research/15_eDNA/Data/COI_clustered_99.fasta /Volumes/Elements/COI_dms/COI_99
but when I run ecotag
obi ecotag -m 0.97 --taxonomy /Volumes/Elements/EMBL_dms/taxonomy/my_tax -R /Volumes/Elements/EMBL_dms/COI_BF3_BR2_097 /Volumes/Elements/COI_dms/COI_99 /Volumes/Elements/COI_dms/COI_99_assigned
I get
DEBUG /Applications/OBITools/obitools3/src/obidms.c:851:obi_open_dms, obi_errno = 5, errno = 2 : Error getting the absolute path to the DMS directory (DMS does not exist) DEBUG /Applications/OBITools/obitools3/src/obi_ecotag.c:291:obi_ecotag, obi_errno = 5, errno = 2 : Error opening the DMS containing the reference database for ecotag
Do I need to import the sequences into the same DMS or is it another problem? edit I tried that and it doesn't solve the problem.
thanks!
Fabian