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I wanted to try the new obitools and started with obi import using the two fastq files from the wolf tutorial.

The first trial :

obi import -d wolf -v forward --fastq wolf_F.fastq

was ok but the second one

obi import -d wolf -v reverse --fastq wolf_R.fastq

produced this nice error :

DEBUG src/obiavl.c:2196:obi_avl_group_add, obi_errno = 20, errno = 0 :
Trying to add a value in an AVL group that is read-only.
Traceback (most recent call last):
  File "/Users/coissac/git/obitools3/OBITools3-0.00.0/bin/obi", line 47, in <module>
    config[root_config_name]['module'].run(config)
  File "python/obitools3/commands/import.pyx", line 120, in obitools3.commands.import.run (build/temp.macosx-10.6-intel-3.5/pyrex/obitools3/commands/import.c:2050)
  File "python/obitools3/obidms/_obiseq.pyx", line 50, in obitools3.obidms._obiseq.OBI_Nuc_Seq_Stored.set_id (build/temp.macosx-10.6-intel-3.5/pyrex/obitools3/obidms/_obiseq.c:2367)
  File "python/obitools3/obidms/_obiseq.pyx", line 51, in obitools3.obidms._obiseq.OBI_Nuc_Seq_Stored.set_id (build/temp.macosx-10.6-intel-3.5/pyrex/obitools3/obidms/_obiseq.c:2309)
  File "python/obitools3/obidms/_obidms.pyx", line 567, in obitools3.obidms._obidms.OBIView_line.__setitem__ (build/temp.macosx-10.6-intel-3.5/pyrex/obitools3/obidms/_obidms.c:10386)
  File "python/obitools3/obidms/_obidmscolumn_str.pyx", line 30, in obitools3.obidms._obidmscolumn_str.OBIDMS_column_str.set_line (build/temp.macosx-10.6-intel-3.5/pyrex/obitools3/obidms/_obidmscolumn_str.c:1599)
  File "python/obitools3/obidms/_obidmscolumn_str.pyx", line 37, in obitools3.obidms._obidmscolumn_str.OBIDMS_column_str.set_line (build/temp.macosx-10.6-intel-3.5/pyrex/obitools3/obidms/_obidmscolumn_str.c:1491)
Exception: Problem setting a value in a column