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  • #138

Closed
Open
Opened Jan 04, 2024 by ROBERT MULDOWNEY@muldowne

Error trying to use multithreading with obi clean

Obiclean is running with no errors using OBIools 1.0.0. We wanted to try the parallel version with 60 threads on a system with 112 threads running RedHat 8. We are receiving the following error: 2024-01-04 13:06:26,296 [clean : INFO ] obi clean 2024-01-04 13:06:26,297 [clean : INFO ] Opened file: /local/home/danielf/obi3/merged.uniq.c10.l80.fasta Traceback (most recent call last): File "/local/home/danielf/anaconda3/envs/obi3/bin/obi", line 62, in config[root_config_name]['module'].run(config) File "python/obitools3/commands/clean.pyx", line 101, in obitools3.commands.clean.run File "python/obitools3/files/uncompress.pyx", line 129, in iter TypeError: 'obitools3.files.uncompress.MagicKeyFile' object is not iterable

The version is OBITools 3.0.1b25 installed in Anaconda with python 3.7.16

Any suggestions?

To upload designs, you'll need to enable LFS and have an admin enable hashed storage. More information
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Reference: obitools/obitools3#138