Cannot import rawdata
Hi,
When I import the NGS rawdata(my file or wolf file), some ERROR was happened~
I try to different options, such as --fastq-input, --input-na-string OBI:INPUTNASTRING, --no-quality, all of them could not run, and the same ERROR info was printed. I don't know how to do the next. Hoping the author or other guys can give me some suggestions! Thanks a lot!
My python version: 3.9.18
My command:
obi import --quality-solexa raw_data/ZTPSN23LB979-WXY_1_R1.fq temp/try.reads1
2023-12-07 09:39:07,830 [import : INFO ] obi import: imports an object (file(s), obiview, taxonomy...) into a DMS
2023-12-07 09:39:07,847 [import : INFO ] Opened file: raw_data/ZTPSN23LB979-WXY_1_R1.fq
2023-12-07 09:39:08,028 [import : INFO ] Importing 60229 entries
Traceback (most recent call last):
File "/home/mjli/obi3-env/bin/obi", line 62, in
config[root_config_name]['module'].run(config)
File "python/obitools3/commands/import.pyx", line 231, in obitools3.commands.import.run
NotImplementedError