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Closed
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Opened Aug 18, 2023 by Sam Lambrechts@sam.lambrechts

Can I import/start with OTU sequences in fasta format?

Hi,

I have a obitools/ecopcr generated database that is imported in a DMS, and I have a fasta file with OTU representative sequences that looks like this:

>Zotu1783
ACGCTGTTATCCCTTAGGTATCTTTTTATTCTGACTCTAAGTTAACTCACCTAAAGAAGTTAATTAATTTCTCCTACCAC
CCCAGTAAAAACCTAAGAATTACTCACGCACATCCTTTTGATTAAAAAATTCATAGCCTAAAGATCTAAAGGGTCTTATC
GTC
>Zotu641
ACGCTGTTATCCCTTAGGTAATTTTTTTCAAACTTTTAAACATAAGTCTTCTTATACAGAAAAAAAAAATTATATAGAAG
TTTATAGTATTCTATTATTGCCCCAACAAAATACATAAGCTTAAATTTAAAATATAATAAAAAAAAAATTAAGCCTTTGT
ATAAAACTCTAAAGGGTCTTATCGTC

Can I import these sequences into my DMS using obi import? And if so, what input format options do I need to specify? Is this format compatible with --fasta-input?

Kind regards, Sam

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Reference: obitools/obitools3#131