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Closed
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Opened Jun 03, 2022 by Camila Gazolla@gazollavolpiano

Example for UNITE

Hello,

Is it possible to, please, provide an example of how to obi import with UNITE?

obi import --unite-input UNITE_public_all_10.05.2021.fasta unite_ref 2022-06-03 18:55:37,056 [import : INFO ] obi import: imports an object (file(s), obiview, taxonomy...) into a DMS 2022-06-03 18:55:37,056 [import : INFO ] Opened file: UNITE_public_all_10.05.2021.fasta 2022-06-03 18:55:37,056 [import : INFO ] Importing an unknown number of entries Traceback (most recent call last): File "/home/camila/ecoPCR/obitools3/obi3-env/bin/obi", line 4, in import('pkg_resources').run_script('OBITools3==3.0.1b18', 'obi') File "/home/camila/ecoPCR/obitools3/obi3-env/lib/python3.9/site-packages/pkg_resources/init.py", line 651, in run_script self.require(requires)[0].run_script(script_name, ns) File "/home/camila/ecoPCR/obitools3/obi3-env/lib/python3.9/site-packages/pkg_resources/init.py", line 1448, in run_script exec(code, namespace, namespace) File "/home/camila/ecoPCR/obitools3/obi3-env/lib/python3.9/site-packages/OBITools3-3.0.1b18-py3.9-linux-x86_64.egg/EGG-INFO/scripts/obi", line 62, in config[root_config_name]['module'].run(config) File "python/obitools3/commands/import.pyx", line 231, in obitools3.commands.import.run

Thank you very much!

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Reference: obitools/obitools3#123