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OBITools3
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Opened by Marc-Olivier Beausoleil@beausoleilmo

Can't use Obitools on Mac with M1

I installed obi tools and it says that it was successful. But when I run obi test, I have an error showing "ImportError".

How could I work around this?

  python3 -m venv obi3-env
  source obi3-env/bin/activate
  pip3 install --upgrade pip setuptools wheel Cython
  pip3 install OBITools3

obi test
Traceback (most recent call last):
  File "/obi3-env/bin/obi", line 59, in <module>
  config = getConfiguration(root_config_name,
                            File "python/obitools3/apps/config.pyx", line 60, in obitools3.apps.config.getConfiguration
                            File "python/obitools3/apps/config.pyx", line 75, in obitools3.apps.config.getConfiguration
                            File "python/obitools3/apps/config.pyx", line 45, in obitools3.apps.config.buildDefaultConfiguration
                            File "python/obitools3/apps/command.pyx", line 41, in genexpr
                            File "python/obitools3/apps/command.pyx", line 41, in genexpr
                            File "python/obitools3/apps/command.pyx", line 28, in obitools3.apps.command.loadCommand
                            File "<frozen importlib._bootstrap_external>", line 522, in _check_name_wrapper
                            File "<frozen importlib._bootstrap_external>", line 1022, in load_module
                            File "<frozen importlib._bootstrap_external>", line 847, in load_module
                            File "<frozen importlib._bootstrap>", line 265, in _load_module_shim
                            File "<frozen importlib._bootstrap>", line 702, in _load
                            File "<frozen importlib._bootstrap>", line 671, in _load_unlocked
                            File "<frozen importlib._bootstrap_external>", line 1174, in exec_module
                            File "<frozen importlib._bootstrap>", line 219, in _call_with_frames_removed
                            File "python/obitools3/commands/addtaxids.pyx", line 1, in init obitools3.commands.addtaxids
                            File "python/obitools3/apps/progress.pyx", line 1, in init obitools3.apps.progress
                            ImportError: dlopen(/obi3-env/lib/python3.8/site-packages/obitools3/utils.cpython-38-darwin.so, 0x0002): symbol not found in flat namespace '_obi_errno'
Edited by Marc-Olivier Beausoleil
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